RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MIS12Q9H081 205 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 AS3MTQ9HBK9 375 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 RIC8AQ9NPQ8 531 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 WWC3Q9ULE0 1092 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 PPFIA2O75334 1257 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 PPFIA4O75335 1185 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 DEPTORQ8TB45 409 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 CARD6Q9BX69 1037 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 IFIH1Q9BYX4 1025 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 TAB2Q9NYJ8 693 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 IPO11Q9UI26 975 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 N4BP1O75113 896 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 YARSP54577 528 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 GOLGA5Q8TBA6 731 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 ZBTB40Q9NUA8 1239 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 U2AF2P26368 475 aaKnown RBP eCLIP14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 RGS16O15492 202 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 DIXDC1Q155Q3 683 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 LPIN2Q92539 896 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 CSRNP1Q96S65 589 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 PALM3A6NDB9 673 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 STX2P32856 288 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 SH3BGRP55822 239 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 CCDC51Q96ER9 411 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 LSM14BQ9BX40 385 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 Q9H521 79 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 KDM2BQ8NHM5 1336 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 GNPTABQ3T906 1256 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 PRR16Q569H4 304 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 FAM89AQ96GI7 184 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 TNNC2P02585 160 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 TYW1Q9NV66 732 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 POLKQ9UBT6 870 aa14.1□□□□□ -0.15
CCDC88C-204ENST00000389857 LARGE2Q8N3Y3 721 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 H0YCG3 227 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 CFBP00751 764 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 RBBP5Q15291 538 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 REXO1Q8N1G1 1221 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 TBC1D22AQ8WUA7 517 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 FAN1Q9Y2M0 1017 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 PCDHB13Q9Y5F0 798 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 GAS7O60861 476 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 NXNQ6DKJ4 435 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 CCDC13Q8IYE1 715 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 IP6K1Q92551 441 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 CBX8Q9HC52 389 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 ARHGAP44Q17R89 818 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 ARHGEF16Q5VV41 709 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 CAPN9O14815 690 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 XRCC5P13010 732 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 CTDSPL2Q05D32 466 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 TYW1BQ6NUM6 668 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 ZBTB8OSQ8IWT0 167 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 TPH2Q8IWU9 490 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 CPXCR1Q8N123 301 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 SPATA5Q8NB90 893 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 RTEL1Q9NZ71 1219 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 THOC2Q8NI27 1593 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 HOXC9P31274 260 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 BSPRYQ5W0U4 402 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 MIER3Q7Z3K6 550 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 NELFCDQ8IXH7 590 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 A2MP01023 1474 aa14.09□□□□□ -0.15
CCDC88C-204ENST00000389857 SPDYE16A6NNV3 312 aaPredicted RBP14.08□□□□□ -0.15
CCDC88C-204ENST00000389857 HGSO14964 777 aaPredicted RBP14.08□□□□□ -0.15
CCDC88C-204ENST00000389857 STAT1P42224 750 aa14.08□□□□□ -0.15
CCDC88C-204ENST00000389857 SPDYE2Q495Y8 402 aa14.08□□□□□ -0.15
CCDC88C-204ENST00000389857 RRAGAQ7L523 313 aa14.08□□□□□ -0.15
CCDC88C-204ENST00000389857 SLFN12Q8IYM2 578 aa14.08□□□□□ -0.15
CCDC88C-204ENST00000389857 CABLES1Q8TDN4 633 aa14.08□□□□□ -0.15
CCDC88C-204ENST00000389857 KRT71Q3SY84 523 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 FAM102BQ5T8I3 360 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 PNMA8AQ86V59 439 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 ALDH1B1P30837 517 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 GARSP41250 739 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 PDE1CQ14123 709 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 MUM1Q2TAK8 710 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 CTAGE3PQ8IX95 158 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 NIM1KQ8IY84 436 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 TRIM58Q8NG06 486 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 MGARPQ8TDB4 240 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 ARPP21Q9UBL0 812 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 SNX14Q9Y5W7 946 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 ARHGAP4P98171 946 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 PHLDB3Q6NSJ2 640 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 SMAP1Q8IYB5 467 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 METTL13Q8N6R0 699 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 SDCCAG3Q96C92 435 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 SCYL1Q96KG9 808 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 C19orf44Q9H6X5 657 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 BAG5Q9UL15 447 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 GOLGA8QA0A0J9YX86 632 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 GOLGA8OA6NCC3 632 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 GOLGA8NF8WBI6 632 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 ANO3Q9BYT9 981 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 TRIM37O94972 964 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 TIMM10P62072 90 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 GBP5Q96PP8 586 aa14.08□□□□□ -0.16
CCDC88C-204ENST00000389857 CHURC1Q8WUH1 139 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 MTX1Q13505 466 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms