RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CHD4Q14839 1912 aa18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 APTXQ7Z2E3 356 aaKnown RBP18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 RGS22Q8NE09 1264 aa18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 SRPRBQ9Y5M8 271 aaKnown RBP18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 GYS2P54840 703 aa18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 ST5P78524 1137 aa18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 IFIT1BQ5T764 474 aaKnown RBP18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 WASF1Q92558 559 aa18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 PARD6BQ9BYG5 372 aa18.49■□□□□ 0.55
NKX3-1-201ENST00000380871 PLEKHA8P1O95397 391 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 PLCD1P51178 756 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 RBL2Q08999 1139 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 FAM196AQ6ZSG2 479 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 NEK11Q8NG66 645 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 NARFQ9UHQ1 456 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 MYH3P11055 1940 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 RPS6KA4O75676 772 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 DEXIO95424 95 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 CYP2C19P33261 490 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 DZIP1Q86YF9 867 aaKnown RBP18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 MYO1BO43795 1136 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 ABL1P00519 1130 aa18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 RIOK1Q9BRS2 568 aaKnown RBP18.48■□□□□ 0.55
NKX3-1-201ENST00000380871 RSRC2Q7L4I2 434 aaKnown RBP18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 ENAHQ8N8S7 591 aaPredicted RBP18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 TRERF1Q96PN7 1200 aa18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 PUF60Q9UHX1 559 aaKnown RBP18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 PNPLA7Q6ZV29 1317 aa18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 A0A1B0GTH6 734 aa18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 DPYDQ12882 1025 aa18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 MCM9Q9NXL9 1143 aa18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 DIXDC1Q155Q3 683 aa18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 IGSF22Q8N9C0 903 aa18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 SYMPKQ92797 1274 aaKnown RBP18.47■□□□□ 0.55
NKX3-1-201ENST00000380871 ZNF804BA4D1E1 1349 aa18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 AKR1B15C9JRZ8 316 aaPredicted RBP18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 USP17L8P0C7I0 530 aa18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 OAS2P29728 719 aaKnown RBP18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 SPATA20Q8TB22 786 aa18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 NFIXQ14938 502 aa18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 CTR9Q6PD62 1173 aa18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 IQCA1Q86XH1 822 aa18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 ZSCAN10Q96SZ4 725 aaPredicted RBP18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 DACH1Q9UI36 760 aa18.46■□□□□ 0.55
NKX3-1-201ENST00000380871 SYNRGQ9UMZ2 1314 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 A0A0U1RQG5 324 aaPredicted RBP18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 CCT6AP40227 531 aaKnown RBP18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 CATIPQ7Z7H3 387 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 NYXQ9GZU5 481 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 COL1A1P02452 1464 aaPredicted RBP18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 CDC25AP30304 524 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 GPR161Q8N6U8 529 aaKnown RBP18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 NSUN4Q96CB9 384 aaKnown RBP18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 DYNLL2Q96FJ2 89 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 PAGE5Q96GU1 130 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 ADGRG1Q9Y653 693 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 TSPY2A6NKD2 308 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 VPS72Q15906 364 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 TRAPPC3LQ5T215 181 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 ELOA2Q8IYF1 753 aaPredicted RBP18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 ZNF579Q8NAF0 562 aaKnown RBP18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 BLZF1Q9H2G9 400 aa18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 SAP30BPQ9UHR5 308 aaKnown RBP18.45■□□□□ 0.54
NKX3-1-201ENST00000380871 CCDC196A0A1B0GTZ2 297 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 CCDC66A2RUB6 948 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 CCDC175P0C221 793 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 CASP14P31944 242 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 USP5P45974 858 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 CUL4BQ13620 913 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 ZNF174Q15697 407 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 PKN1Q16512 942 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 GOLGA6L9A6NEM1 432 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 FXR1P51114 621 aaKnown RBP eCLIP18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 SMC1AQ14683 1233 aaKnown RBP18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 PHLPP1O60346 1717 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 NID2Q14112 1375 aa18.44■□□□□ 0.54
NKX3-1-201ENST00000380871 TRIM75PA6NK02 468 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 HNRNPH2P55795 449 aaKnown RBP18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 GRIK5Q16478 980 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 FBXO33Q7Z6M2 555 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 CREBRFQ8IUR6 639 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 TRIML1Q8N9V2 468 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 ACRBPQ8NEB7 543 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 CRNKL1Q9BZJ0 848 aaKnown RBP18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 ANKRD36CQ5JPF3 1778 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 RNF225M0QZC1 329 aaPredicted RBP18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 ADAMTS3O15072 1205 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 TMTC2Q8N394 836 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 FUT8Q9BYC5 575 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 UBXN6Q9BZV1 441 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 ADD3Q9UEY8 706 aaKnown RBP18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 GOLGA1Q92805 767 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 ARFGAP3Q9NP61 516 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 CTNND2Q9UQB3 1225 aa18.43■□□□□ 0.54
NKX3-1-201ENST00000380871 TIAM2Q8IVF5 1701 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 GYPCP04921 128 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 VEGFAP15692 232 aaPredicted RBP18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 ERCC5P28715 1186 aaPredicted RBP18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 SEC23AQ15436 765 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms