RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 RTN1Q16799 776 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 EARS2Q5JPH6 523 aaKnown RBP17.87■□□□□ 0.45
CKAP4-201ENST00000378026 WASF1Q92558 559 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 TTC26A0AVF1 554 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 MACROD2A1Z1Q3 448 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 PDE2AO00408 941 aaPredicted RBP17.86■□□□□ 0.45
CKAP4-201ENST00000378026 PRDM1O75626 825 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 CPP00450 1065 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 ZNF174Q15697 407 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 EZH2Q15910 746 aaKnown RBP17.86■□□□□ 0.45
CKAP4-201ENST00000378026 AIDAQ96BJ3 306 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 ORAI2Q96SN7 254 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 CEP131Q9UPN4 1083 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 DUSP10Q9Y6W6 482 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 WNT7AO00755 349 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 IFNAR1P17181 557 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 ADD2P35612 726 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 CABP4P57796 275 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 PPARAQ07869 468 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 GPIHBP1Q8IV16 184 aa17.86■□□□□ 0.45
CKAP4-201ENST00000378026 SUGP1Q8IWZ8 645 aaKnown RBP17.86■□□□□ 0.45
CKAP4-201ENST00000378026 PIH1D3Q9NQM4 214 aaKnown RBP17.86■□□□□ 0.45
CKAP4-201ENST00000378026 KCNJ18B7U540 433 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 CSB-PGBD3P0DP91 1061 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 TATP17735 454 aaPredicted RBP17.85■□□□□ 0.45
CKAP4-201ENST00000378026 INPP5BP32019 993 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 KCNJ12Q14500 433 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 CCDC91Q7Z6B0 441 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.85■□□□□ 0.45
CKAP4-201ENST00000378026 PSMB7Q99436 277 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 FOXP1Q9H334 677 aaPredicted RBP17.85■□□□□ 0.45
CKAP4-201ENST00000378026 SHTN1A0MZ66 631 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 TRIM75PA6NK02 468 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 IBSPP21815 317 aaPredicted RBP17.85■□□□□ 0.45
CKAP4-201ENST00000378026 TTF1Q15361 905 aaPredicted RBP17.85■□□□□ 0.45
CKAP4-201ENST00000378026 CCNI2Q6ZMN8 369 aaPredicted RBP17.85■□□□□ 0.45
CKAP4-201ENST00000378026 ZNF579Q8NAF0 562 aaKnown RBP17.85■□□□□ 0.45
CKAP4-201ENST00000378026 HDAC7Q8WUI4 952 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 FAM89AQ96GI7 184 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 TACC3Q9Y6A5 838 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 MCM3P25205 808 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 HERVK_113P62684 666 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 SLC7A5Q01650 507 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 METTL24Q5JXM2 366 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 ANKRD20A12PQ8NF67 263 aa17.85■□□□□ 0.45
CKAP4-201ENST00000378026 H0YHG0 523 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 CIAO1O76071 339 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 TSR1Q2NL82 804 aaKnown RBP17.84■□□□□ 0.45
CKAP4-201ENST00000378026 AEBP2Q6ZN18 517 aaPredicted RBP17.84■□□□□ 0.45
CKAP4-201ENST00000378026 NAPBQ9H115 298 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 TRIM49BA6NDI0 452 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 IDEP14735 1019 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 TCP11X2Q5H9J9 407 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 SGMS1Q86VZ5 419 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 IFNL2Q8IZJ0 200 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 NELFBQ8WX92 580 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 LACRTQ9GZZ8 138 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 HAUS4Q9H6D7 363 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 CAPN7Q9Y6W3 813 aa17.84■□□□□ 0.45
CKAP4-201ENST00000378026 ITIH6Q6UXX5 1313 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 PSMD14O00487 310 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 ATP1A2P50993 1020 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 CYP27A1Q02318 531 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 KCTD16Q68DU8 428 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 KCNV1Q6PIU1 500 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 ANKRD18AQ8IVF6 992 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 GSDMAQ96QA5 445 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 FAM107BQ9H098 131 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 GDAQ9Y2T3 454 aa17.83■□□□□ 0.45
CKAP4-201ENST00000378026 LUC7L2Q9Y383 392 aaKnown RBP17.83■□□□□ 0.45
CKAP4-201ENST00000378026 RCCD1A6NED2 376 aa17.83■□□□□ 0.44
CKAP4-201ENST00000378026 SYNE4Q8N205 404 aa17.83■□□□□ 0.44
CKAP4-201ENST00000378026 OR8K1Q8NGG5 319 aa17.83■□□□□ 0.44
CKAP4-201ENST00000378026 ZEB2O60315 1214 aa17.83■□□□□ 0.44
CKAP4-201ENST00000378026 PPFIA1Q13136 1202 aa17.83■□□□□ 0.44
CKAP4-201ENST00000378026 PAK1Q13153 545 aa17.83■□□□□ 0.44
CKAP4-201ENST00000378026 PDCLQ13371 301 aa17.83■□□□□ 0.44
CKAP4-201ENST00000378026 SMCR8Q8TEV9 937 aaPredicted RBP17.83■□□□□ 0.44
CKAP4-201ENST00000378026 SMARCAL1Q9NZC9 954 aa17.83■□□□□ 0.44
CKAP4-201ENST00000378026 LIMA1Q9UHB6 759 aaKnown RBP17.83■□□□□ 0.44
CKAP4-201ENST00000378026 MYO1FO00160 1098 aa17.82■□□□□ 0.44
CKAP4-201ENST00000378026 DEXIO95424 95 aa17.82■□□□□ 0.44
CKAP4-201ENST00000378026 FECHP22830 423 aa17.82■□□□□ 0.44
CKAP4-201ENST00000378026 WTAPQ15007 396 aa17.82■□□□□ 0.44
CKAP4-201ENST00000378026 TICAM2Q86XR7 235 aa17.82■□□□□ 0.44
CKAP4-201ENST00000378026 CRACR2BQ8N4Y2 399 aaPredicted RBP17.82■□□□□ 0.44
CKAP4-201ENST00000378026 AATFQ9NY61 560 aaKnown RBP eCLIP17.82■□□□□ 0.44
CKAP4-201ENST00000378026 SHOX2O60902 331 aaPredicted RBP17.82■□□□□ 0.44
CKAP4-201ENST00000378026 MAP2K2P36507 400 aa17.82■□□□□ 0.44
CKAP4-201ENST00000378026 CXorf56Q9H5V9 222 aa17.82■□□□□ 0.44
CKAP4-201ENST00000378026 ARMT1Q9H993 441 aa17.82■□□□□ 0.44
CKAP4-201ENST00000378026 DMGDHQ9UI17 866 aaKnown RBP17.82■□□□□ 0.44
CKAP4-201ENST00000378026 PRKAB2O43741 272 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 PDE6AP16499 860 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 CKAP4Q07065 602 aaKnown RBP17.81■□□□□ 0.44
CKAP4-201ENST00000378026 SH3RF1Q7Z6J0 888 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 SH2D3CQ8N5H7 860 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 ARL8AQ96BM9 186 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 MAP3K15Q6ZN16 1313 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 STK36Q9NRP7 1315 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms