RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FECHP22830 423 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 ARHGAP25P42331 645 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 CT47A1Q5JQC4 288 aaPredicted RBP18.55■□□□□ 0.56
SDC4-201ENST00000372733 SDR42E1Q8WUS8 393 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 VPS16Q9H269 839 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 ABHD10Q9NUJ1 306 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 TAB2Q9NYJ8 693 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 L1RE1Q9UN81 338 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 ARAP2Q8WZ64 1704 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.55■□□□□ 0.56
SDC4-201ENST00000372733 MYH6P13533 1939 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 ITIH6Q6UXX5 1313 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 PNPLA7Q6ZV29 1317 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 SEMA3EO15041 775 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 N4BP3O15049 544 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 SEC23AQ15436 765 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 TMTC2Q8N394 836 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 NOA1Q8NC60 698 aaKnown RBP18.55■□□□□ 0.56
SDC4-201ENST00000372733 PHF20Q9BVI0 1012 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 PSD3Q9NYI0 1048 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 LCMT1Q9UIC8 334 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 ZBTB1Q9Y2K1 713 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 ERLIN1O75477 346 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 BCAMP50895 628 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 MAPK8IP2Q13387 824 aaPredicted RBP18.54■□□□□ 0.56
SDC4-201ENST00000372733 CCDC51Q96ER9 411 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 SLF1Q9BQI6 1058 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 CARD10Q9BWT7 1032 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 FAN1Q9Y2M0 1017 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 MYH8P13535 1937 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 GNAT2P19087 354 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 RCAN1P53805 252 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 GOLGA5Q8TBA6 731 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 RNF41Q9H4P4 317 aaPredicted RBP18.54■□□□□ 0.56
SDC4-201ENST00000372733 DCCP43146 1447 aa18.54■□□□□ 0.56
SDC4-201ENST00000372733 CTAGE15A4D2H0 777 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 CTAGE8P0CG41 777 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 FUT2Q10981 343 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 RRAGBQ5VZM2 374 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 NCAPH2Q6IBW4 605 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 CTAGE6Q86UF2 777 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 TMTC1Q8IUR5 882 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 CTAGE4Q8IX94 777 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 FERMT2Q96AC1 680 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 ZFP91Q96JP5 570 aaPredicted RBP18.53■□□□□ 0.56
SDC4-201ENST00000372733 NUP88Q99567 741 aaPredicted RBP18.53■□□□□ 0.56
SDC4-201ENST00000372733 V9GY48 417 aaPredicted RBP18.53■□□□□ 0.56
SDC4-201ENST00000372733 RTL9Q8NET4 1388 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 XBP1P17861 261 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 COPB1P53618 953 aaKnown RBP18.53■□□□□ 0.56
SDC4-201ENST00000372733 ADGRA1Q86SQ6 560 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 ENAHQ8N8S7 591 aaPredicted RBP18.53■□□□□ 0.56
SDC4-201ENST00000372733 TRIM10Q9UDY6 481 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 IQSEC3Q9UPP2 1182 aaPredicted RBP18.53■□□□□ 0.56
SDC4-201ENST00000372733 BCORQ6W2J9 1755 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 WHAMMP3Q1A5X7 153 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 TTC38Q5R3I4 469 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 CADPS2Q86UW7 1296 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 SLC4A9Q96Q91 983 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 LRP2BPQ9P2M1 347 aa18.53■□□□□ 0.56
SDC4-201ENST00000372733 LIMA1Q9UHB6 759 aaKnown RBP18.53■□□□□ 0.56
SDC4-201ENST00000372733 ANKRD36CQ5JPF3 1778 aa18.52■□□□□ 0.56
SDC4-201ENST00000372733 EIF3JO75822 258 aaKnown RBP18.52■□□□□ 0.56
SDC4-201ENST00000372733 SLC20A2Q08357 652 aa18.52■□□□□ 0.56
SDC4-201ENST00000372733 PTGDRQ13258 359 aa18.52■□□□□ 0.56
SDC4-201ENST00000372733 TUBB2AQ13885 445 aa18.52■□□□□ 0.56
SDC4-201ENST00000372733 CASP8Q14790 479 aa18.52■□□□□ 0.56
SDC4-201ENST00000372733 TUBB2BQ9BVA1 445 aa18.52■□□□□ 0.56
SDC4-201ENST00000372733 RNF216Q9NWF9 866 aaPredicted RBP18.52■□□□□ 0.56
SDC4-201ENST00000372733 ACTN2P35609 894 aa18.52■□□□□ 0.55
SDC4-201ENST00000372733 CYP26C1Q6V0L0 522 aa18.52■□□□□ 0.55
SDC4-201ENST00000372733 ESR2Q92731 530 aa18.52■□□□□ 0.55
SDC4-201ENST00000372733 MTRQ99707 1265 aa18.52■□□□□ 0.55
SDC4-201ENST00000372733 MTA3Q9BTC8 594 aa18.52■□□□□ 0.55
SDC4-201ENST00000372733 TRIM34Q9BYJ4 488 aa18.52■□□□□ 0.55
SDC4-201ENST00000372733 CYP2D7A0A087X1C5 515 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 CYP7A1P22680 504 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 KRT9P35527 623 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 AMPD2Q01433 879 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 NPY5RQ15761 445 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 E2F4Q16254 413 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 MAPK8IP1Q9UQF2 711 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 SLIT2O94813 1529 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 STRCP1A6NGW2 1772 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 TRIM66O15016 1216 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 PHACTR2O75167 634 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 PAK1Q13153 545 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 TNFRSF25Q93038 417 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 CCDC102AQ96A19 550 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 CHP1Q99653 195 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 TSPYL1Q9H0U9 437 aa18.51■□□□□ 0.55
SDC4-201ENST00000372733 REXO2Q9Y3B8 237 aaKnown RBP18.51■□□□□ 0.55
SDC4-201ENST00000372733 PLCH1Q4KWH8 1693 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 SOS2Q07890 1332 aaPredicted RBP18.5■□□□□ 0.55
SDC4-201ENST00000372733 KCNJ18B7U540 433 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 CYP19A1P11511 503 aaPredicted RBP18.5■□□□□ 0.55
SDC4-201ENST00000372733 ATP2C1P98194 919 aaPredicted RBP18.5■□□□□ 0.55
SDC4-201ENST00000372733 KCNJ12Q14500 433 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 NELFBQ8WX92 580 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 CWC15Q9P013 229 aaKnown RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms