RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 HAUS1Q96CS2 278 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLIP1-203ENST00000361654 PNMA3Q9UL41 463 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 KCNH3Q9ULD8 1083 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 SEMA3EO15041 775 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 TMEM191BP0C7N4 346 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 SLC10A4Q96EP9 437 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 NUCKS1Q9H1E3 243 aaKnown RBP12.12□□□□□ -0.47
CLIP1-203ENST00000361654 SAMD15Q9P1V8 674 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 LOC102724428A0A0B4J2F2 783 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 BBOX1O75936 387 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 SIK1P57059 783 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 PAK1Q13153 545 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 FYB2Q5VWT5 728 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 CCDC186Q7Z3E2 898 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 GCNAQ96QF7 691 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 NACC1Q96RE7 527 aa12.12□□□□□ -0.47
CLIP1-203ENST00000361654 AOX1Q06278 1338 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 WDR46O15213 610 aaKnown RBP12.11□□□□□ -0.47
CLIP1-203ENST00000361654 POLGP54098 1239 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-203ENST00000361654 IRX5P78411 483 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-203ENST00000361654 SATB1Q01826 763 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 CTDSPL2Q05D32 466 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 FAM160A1Q05DH4 1040 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 TYRO3Q06418 890 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 PPARAQ07869 468 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 USPL1Q5W0Q7 1092 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 SYCE1Q8N0S2 351 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 TSPYL6Q8N831 410 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 SWAP70Q9UH65 585 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 RAPGEF6Q8TEU7 1601 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 PPP2R5CQ13362 524 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 SLFN13Q68D06 897 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 CPLX4Q7Z7G2 160 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 RPUSD2Q8IZ73 545 aaKnown RBP12.11□□□□□ -0.47
CLIP1-203ENST00000361654 PHACTR3Q96KR7 559 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 ZBED2Q9BTP6 218 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 CCDC68Q9H2F9 335 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 FEZ2Q9UHY8 353 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-203ENST00000361654 SLC8A2Q9UPR5 921 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 HADHQ16836 314 aaKnown RBP12.11□□□□□ -0.47
CLIP1-203ENST00000361654 KRT24Q2M2I5 525 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 CCDC84Q86UT8 332 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-203ENST00000361654 IQCDQ96DY2 449 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 LARSQ9P2J5 1176 aaKnown RBP12.11□□□□□ -0.47
CLIP1-203ENST00000361654 CIB2O75838 187 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 BTDP43251 543 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 ZAP70P43403 619 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 RTKN2Q8IZC4 609 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 SESTD1Q86VW0 696 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 SLC17A8Q8NDX2 589 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 ATP2A3Q93084 1043 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 LGR6Q9HBX8 967 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 LMCD1Q9NZU5 365 aa12.11□□□□□ -0.47
CLIP1-203ENST00000361654 STK25O00506 426 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 IGBP1P78318 339 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 KRT81Q14533 505 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 DYMQ7RTS9 669 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 USP17L12C9JPN9 530 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 USP17L21D6R901 530 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 BCAMP50895 628 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 CDHR1Q96JP9 859 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 UTP11Q9Y3A2 253 aaKnown RBP12.1□□□□□ -0.47
CLIP1-203ENST00000361654 FMNL1O95466 1100 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-203ENST00000361654 SERPINB2P05120 415 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 ELF1P32519 619 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 ITKQ08881 620 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 SMAP1Q8IYB5 467 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-203ENST00000361654 ATP6V0A1Q93050 837 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 PRIMPOLQ96LW4 560 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 LZTFL1Q9NQ48 299 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 C1orf112Q9NSG2 853 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 IFNKQ9P0W0 207 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 IFRD2Q12894 506 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-203ENST00000361654 DMP1Q13316 513 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-203ENST00000361654 GALNT17Q6IS24 598 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 ZBTB33Q86T24 672 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 PLA2G4DQ86XP0 818 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 MLKLQ8NB16 471 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 UBLCP1Q8WVY7 318 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-203ENST00000361654 CLSTN2Q9H4D0 955 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 ASIC3Q9UHC3 531 aa12.1□□□□□ -0.47
CLIP1-203ENST00000361654 TMEM232C9JQI7 657 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 HOXD10P28358 340 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 AOC3Q16853 763 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 FAM47AQ5JRC9 791 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 C1orf228Q6PIY5 440 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 DDX17Q92841 729 aaKnown RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 EPSTI1Q96J88 318 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 IPO11Q9UI26 975 aaKnown RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 ATF5Q9Y2D1 282 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 ZKSCAN5Q9Y2L8 839 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 CCDC121Q6ZUS5 278 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 RSRC2Q7L4I2 434 aaKnown RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 ZBTB38Q8NAP3 1195 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 SUCLG2Q96I99 432 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 SLC12A6Q9UHW9 1150 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 PLEKHG3A1L390 1219 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 SLC27A2O14975 620 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 PRR16Q569H4 304 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms