RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CYP2D6P10635 497 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 ERCC5P28715 1186 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-201ENST00000360535 LONRF2Q1L5Z9 754 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 ZNF34Q8IZ26 560 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 RNF26Q9BY78 433 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-201ENST00000360535 ADD3Q9UEY8 706 aaKnown RBP13.74□□□□□ -0.21
CLIP3-201ENST00000360535 MYH8P13535 1937 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 ENC1O14682 589 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 GYPCP04921 128 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 KRT31Q15323 416 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 NT5DC1Q5TFE4 455 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 JAKMIP3Q5VZ66 844 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 TRIML1Q8N9V2 468 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 CTCFLQ8NI51 663 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-201ENST00000360535 ATRNO75882 1429 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 TNS2Q63HR2 1409 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 PPP1R3GB7ZBB8 358 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 KRT9P35527 623 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 UBXN1Q04323 297 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 ZNF579Q8NAF0 562 aaKnown RBP13.73□□□□□ -0.21
CLIP3-201ENST00000360535 GDAP1L1Q96MZ0 367 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 PP2D1A8MPX8 630 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 MYO1BO43795 1136 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 MFAP3LO75121 409 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 TXLNAP40222 546 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 SEC23AQ15436 765 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 SRBD1Q8N5C6 995 aaKnown RBP13.73□□□□□ -0.21
CLIP3-201ENST00000360535 NELFBQ8WX92 580 aa13.73□□□□□ -0.21
CLIP3-201ENST00000360535 ZNF142P52746 1687 aaPredicted RBP13.73□□□□□ -0.21
CLIP3-201ENST00000360535 CTAGE9A4FU28 777 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 CYP2C19P33261 490 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 CRKLP46109 303 aaKnown RBP13.72□□□□□ -0.21
CLIP3-201ENST00000360535 NCAPH2Q6IBW4 605 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 PCMTD1Q96MG8 357 aaPredicted RBP13.72□□□□□ -0.21
CLIP3-201ENST00000360535 CHP1Q99653 195 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 PHF20Q9BVI0 1012 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 PDE11AQ9HCR9 933 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 VPS18Q9P253 973 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 RTL9Q8NET4 1388 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 TSPY2A6NKD2 308 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 ERCC3P19447 782 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 IL6STP40189 918 aaPredicted RBP13.72□□□□□ -0.21
CLIP3-201ENST00000360535 RABGGTAQ92696 567 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 PNKPQ96T60 521 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.72□□□□□ -0.21
CLIP3-201ENST00000360535 ECM29Q5VYK3 1845 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 RSRC2Q7L4I2 434 aaKnown RBP13.72□□□□□ -0.21
CLIP3-201ENST00000360535 SRGAP1Q7Z6B7 1085 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 IQUBQ8NA54 791 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 CCDC102AQ96A19 550 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 CAPZA3Q96KX2 299 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 GNL3LQ9NVN8 582 aaKnown RBP13.72□□□□□ -0.21
CLIP3-201ENST00000360535 MYH6P13533 1939 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 XDHP47989 1333 aa13.72□□□□□ -0.21
CLIP3-201ENST00000360535 KLRK1P26718 216 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 APTXQ7Z2E3 356 aaKnown RBP13.71□□□□□ -0.21
CLIP3-201ENST00000360535 ANKRD20A12PQ8NF67 263 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 PANX2Q96RD6 677 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 CALCOCO1Q9P1Z2 691 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 BAZ2AQ9UIF9 1905 aaKnown RBP13.71□□□□□ -0.21
CLIP3-201ENST00000360535 H3BQF6 201 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 N4BP1O75113 896 aaKnown RBP13.71□□□□□ -0.21
CLIP3-201ENST00000360535 ERVK-24P63145 666 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 CAVIN4Q5BKX8 364 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 C3orf67Q6ZVT6 689 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 RGS22Q8NE09 1264 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 FUT8Q9BYC5 575 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 CDC23Q9UJX2 597 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 PNPLA7Q6ZV29 1317 aa13.71□□□□□ -0.21
CLIP3-201ENST00000360535 KCNJ18B7U540 433 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 ADAMTS2O95450 1211 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 STAT6P42226 847 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 KCNJ12Q14500 433 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 CNGA4Q8IV77 575 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 GSDMAQ96QA5 445 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 CTAGE1Q96RT6 745 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 ABCB6Q9NP58 842 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 HDAC6Q9UBN7 1215 aa13.71□□□□□ -0.22
CLIP3-201ENST00000360535 CHD4Q14839 1912 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 ERVV-1B6SEH8 477 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 PRPF3O43395 683 aaKnown RBP13.7□□□□□ -0.22
CLIP3-201ENST00000360535 COPB1P53618 953 aaKnown RBP13.7□□□□□ -0.22
CLIP3-201ENST00000360535 PAK1Q13153 545 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 ANKRD18AQ8IVF6 992 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 CCDC87Q9NVE4 849 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 ZNF335Q9H4Z2 1342 aaPredicted RBP13.7□□□□□ -0.22
CLIP3-201ENST00000360535 UBR2Q8IWV8 1755 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 PARP4Q9UKK3 1724 aaKnown RBP13.7□□□□□ -0.22
CLIP3-201ENST00000360535 SRGAP2O75044 1071 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 ZMYND10O75800 440 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 TROAPQ12815 778 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 TAF3Q5VWG9 929 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 CTR9Q6PD62 1173 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 FERMT2Q96AC1 680 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 CPVLQ9H3G5 476 aa13.7□□□□□ -0.22
CLIP3-201ENST00000360535 PRCPP42785 496 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 PDE4CQ08493 712 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 GPS2Q13227 327 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 IL17AQ16552 155 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 SPATA20Q8TB22 786 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms