RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 TFAP4Q01664 338 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 FAM110CQ1W6H9 321 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 FAM47AQ5JRC9 791 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 ANKRD13CQ8N6S4 541 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 GTF3C2Q8WUA4 911 aaPredicted RBP20.11■□□□□ 0.81
CLN3-203ENST00000357806 CEP95Q96GE4 821 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 RNF41Q9H4P4 317 aaPredicted RBP20.11■□□□□ 0.81
CLN3-203ENST00000357806 RPAP3Q9H6T3 665 aaPredicted RBP20.11■□□□□ 0.81
CLN3-203ENST00000357806 TOMM22Q9NS69 142 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 NYAP2Q9P242 653 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 CTNNA3Q9UI47 895 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 SGSM2O43147 1006 aa20.1■□□□□ 0.81
CLN3-203ENST00000357806 RANBP6O60518 1105 aaKnown RBP20.1■□□□□ 0.81
CLN3-203ENST00000357806 IMMTQ16891 758 aaKnown RBP20.1■□□□□ 0.81
CLN3-203ENST00000357806 PPP4R3BQ5MIZ7 849 aa20.1■□□□□ 0.81
CLN3-203ENST00000357806 AKNAD1Q5T1N1 836 aa20.1■□□□□ 0.81
CLN3-203ENST00000357806 CATSPERGQ6ZRH7 1159 aa20.1■□□□□ 0.81
CLN3-203ENST00000357806 STAG1Q8WVM7 1258 aa20.1■□□□□ 0.81
CLN3-203ENST00000357806 MTMR4Q9NYA4 1195 aa20.1■□□□□ 0.81
CLN3-203ENST00000357806 PLXNB2O15031 1838 aa20.09■□□□□ 0.81
CLN3-203ENST00000357806 WDR46O15213 610 aaKnown RBP20.09■□□□□ 0.81
CLN3-203ENST00000357806 TTLL1O95922 423 aa20.09■□□□□ 0.81
CLN3-203ENST00000357806 GNRH1P01148 92 aa20.09■□□□□ 0.81
CLN3-203ENST00000357806 RRP12Q5JTH9 1297 aaKnown RBP20.09■□□□□ 0.81
CLN3-203ENST00000357806 MFSD6Q6ZSS7 791 aa20.09■□□□□ 0.81
CLN3-203ENST00000357806 TBC1D10CQ8IV04 446 aa20.09■□□□□ 0.81
CLN3-203ENST00000357806 P2RX7Q99572 595 aaKnown RBP20.09■□□□□ 0.81
CLN3-203ENST00000357806 TANGO6Q9C0B7 1094 aa20.09■□□□□ 0.81
CLN3-203ENST00000357806 NBPF3Q9H094 633 aa20.09■□□□□ 0.81
CLN3-203ENST00000357806 INCENPQ9NQS7 918 aa20.09■□□□□ 0.81
CLN3-203ENST00000357806 CAP1Q01518 475 aa20.08■□□□□ 0.81
CLN3-203ENST00000357806 FBXO46Q6PJ61 603 aaPredicted RBP20.08■□□□□ 0.81
CLN3-203ENST00000357806 SPICE1Q8N0Z3 855 aa20.08■□□□□ 0.81
CLN3-203ENST00000357806 ARHGAP39Q9C0H5 1083 aa20.08■□□□□ 0.81
CLN3-203ENST00000357806 SYNPO2Q9UMS6 1093 aa20.08■□□□□ 0.81
CLN3-203ENST00000357806 TACC3Q9Y6A5 838 aa20.08■□□□□ 0.81
CLN3-203ENST00000357806 RAD21O60216 631 aa20.07■□□□□ 0.8
CLN3-203ENST00000357806 PSMC4P43686 418 aa20.07■□□□□ 0.8
CLN3-203ENST00000357806 NT5C2P49902 561 aa20.07■□□□□ 0.8
CLN3-203ENST00000357806 FCGRTP55899 365 aa20.07■□□□□ 0.8
CLN3-203ENST00000357806 KIAA1755Q5JYT7 1200 aa20.07■□□□□ 0.8
CLN3-203ENST00000357806 MORF4L1Q9UBU8 362 aa20.07■□□□□ 0.8
CLN3-203ENST00000357806 CLIP2Q9UDT6 1046 aa20.07■□□□□ 0.8
CLN3-203ENST00000357806 ECM2O94769 699 aaPredicted RBP20.06■□□□□ 0.8
CLN3-203ENST00000357806 MKL1Q969V6 931 aa20.06■□□□□ 0.8
CLN3-203ENST00000357806 ABHD8Q96I13 439 aa20.06■□□□□ 0.8
CLN3-203ENST00000357806 HTTP42858 3142 aa20.06■□□□□ 0.8
CLN3-203ENST00000357806 NEDD4P46934 1319 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 FMNL1O95466 1100 aaPredicted RBP20.05■□□□□ 0.8
CLN3-203ENST00000357806 CTGFP29279 349 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 CASC1Q6TDU7 716 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 LBX2Q6XYB7 198 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 TRIM47Q96LD4 638 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 STX8Q9UNK0 236 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 PTPN22Q9Y2R2 807 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 MYPNQ86TC9 1320 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 SPDYE16A6NNV3 312 aaPredicted RBP20.05■□□□□ 0.8
CLN3-203ENST00000357806 HOXD10P28358 340 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 PRMT2P55345 433 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 PTH1RQ03431 593 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 COG2Q14746 738 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 KIAA1211Q6ZU35 1233 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 LRRC47Q8N1G4 583 aaKnown RBP20.05■□□□□ 0.8
CLN3-203ENST00000357806 ESR2Q92731 530 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 ESYT1Q9BSJ8 1104 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 PAGR1Q9BTK6 254 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 IL17RBQ9NRM6 502 aa20.05■□□□□ 0.8
CLN3-203ENST00000357806 U3KPZ7 1027 aaPredicted RBP20.05■□□□□ 0.8
CLN3-203ENST00000357806 CENPFP49454 3210 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 RBBP6Q7Z6E9 1792 aaKnown RBP20.04■□□□□ 0.8
CLN3-203ENST00000357806 F5H6K3 240 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 CDC45O75419 566 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 FLOT1O75955 427 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 ERVK-9P63128 1117 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 ERVK-24P63145 666 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 KLRC3Q07444 240 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 GMCL1P1Q8NEA9 526 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 GPRC5AQ8NFJ5 357 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 TXNRD2Q9NNW7 524 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 HOXC10Q9NYD6 342 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 RABGAP1Q9Y3P9 1069 aa20.04■□□□□ 0.8
CLN3-203ENST00000357806 ZNFX1Q9P2E3 1918 aaKnown RBP20.03■□□□□ 0.8
CLN3-203ENST00000357806 TNPO2O14787 897 aaKnown RBP20.03■□□□□ 0.8
CLN3-203ENST00000357806 NMT2O60551 498 aa20.03■□□□□ 0.8
CLN3-203ENST00000357806 NDUFB10O96000 172 aa20.03■□□□□ 0.8
CLN3-203ENST00000357806 FAM83BQ5T0W9 1011 aa20.03■□□□□ 0.8
CLN3-203ENST00000357806 CNNM2Q9H8M5 875 aa20.03■□□□□ 0.8
CLN3-203ENST00000357806 TCP11L1Q9NUJ3 509 aa20.03■□□□□ 0.8
CLN3-203ENST00000357806 RBPJLQ9UBG7 517 aa20.03■□□□□ 0.8
CLN3-203ENST00000357806 HPS5Q9UPZ3 1129 aa20.03■□□□□ 0.8
CLN3-203ENST00000357806 IFFO2Q5TF58 517 aa20.02■□□□□ 0.8
CLN3-203ENST00000357806 KRT23Q9C075 422 aa20.02■□□□□ 0.8
CLN3-203ENST00000357806 SRRDQ9UH36 339 aa20.02■□□□□ 0.8
CLN3-203ENST00000357806 ZNF236Q9UL36 1845 aa20.02■□□□□ 0.8
CLN3-203ENST00000357806 DSG3P32926 999 aa20.01■□□□□ 0.79
CLN3-203ENST00000357806 NOVP48745 357 aa20.01■□□□□ 0.79
CLN3-203ENST00000357806 MB21D1Q8N884 522 aa20.01■□□□□ 0.79
CLN3-203ENST00000357806 MAP4K1Q92918 833 aa20.01■□□□□ 0.79
CLN3-203ENST00000357806 COA7Q96BR5 231 aa20.01■□□□□ 0.79
CLN3-203ENST00000357806 MYH6P13533 1939 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms