RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 KRT81Q14533 505 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 SPOUT1Q5T280 376 aaKnown RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 MIER3Q7Z3K6 550 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 TRIM50Q86XT4 487 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 MCF2L2Q86YR7 1114 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 REXO1Q8N1G1 1221 aaKnown RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 RIC8AQ9NPQ8 531 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 TYW1Q9NV66 732 aaKnown RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 KDM2BQ8NHM5 1336 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 PSDA5PKW4 1024 aaPredicted RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 POLR2BP30876 1174 aaKnown RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 ZNF75DP51815 510 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 KBTBD3Q8NAB2 608 aa7.14□□□□□ -1.27
UPF2-201ENST00000356352 EDC4Q6P2E9 1401 aaKnown RBP7.14□□□□□ -1.27
UPF2-201ENST00000356352 LMTK3Q96Q04 1460 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 TRAPPC8Q9Y2L5 1435 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 EIF3CLB5ME19 914 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 ZNF853P0CG23 659 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 SPATS2Q86XZ4 545 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 EIF3CQ99613 913 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 VPS37BQ9H9H4 285 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 GARSP41250 739 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 YARSP54577 528 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 GBP7Q8N8V2 638 aaPredicted RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 FLAD1Q8NFF5 587 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 WWC3Q9ULE0 1092 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 FAN1Q9Y2M0 1017 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 UHRF1BP1Q6BDS2 1440 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 ASXL2Q76L83 1435 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 DDX39AO00148 427 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 GAS7O60861 476 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 ZNF202O95125 648 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 TBC1D8O95759 1140 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 TNNI1P19237 187 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 DLGAP5Q15398 846 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 WHAMMP3Q1A5X7 153 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 LONRF2Q1L5Z9 754 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 DCAF15Q66K64 600 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 PPP1R2P3Q6NXS1 205 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 KRBA2Q6ZNG9 492 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 KRT26Q7Z3Y9 468 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 PALM2Q8IXS6 379 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 RNF10Q8N5U6 811 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 TRIM58Q8NG06 486 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 MED10Q9BTT4 135 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 Q9H521 79 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 BTG4Q9NY30 223 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 AATFQ9NY61 560 aaKnown RBP eCLIP7.13□□□□□ -1.27
UPF2-201ENST00000356352 FAM8A1Q9UBU6 413 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 MRPL11Q9Y3B7 192 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 SNX14Q9Y5W7 946 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 CSADQ9Y600 493 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 SYCP2Q9BX26 1530 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 UGGT2Q9NYU1 1516 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 ARHGEF12Q9NZN5 1544 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 MGEA5O60502 916 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 RPS6KA2Q15349 733 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 CCDC38Q502W7 563 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 KRT12Q99456 494 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 ADPGKQ9BRR6 497 aa7.13□□□□□ -1.27
UPF2-201ENST00000356352 TRIM56Q9BRZ2 755 aaKnown RBP7.13□□□□□ -1.27
UPF2-201ENST00000356352 XRCC5P13010 732 aaKnown RBP7.12□□□□□ -1.27
UPF2-201ENST00000356352 ABCD1P33897 745 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 GCKRQ14397 625 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 MRRFQ96E11 262 aaKnown RBP7.12□□□□□ -1.27
UPF2-201ENST00000356352 CABS1Q96KC9 395 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 SLC52A2Q9HAB3 445 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 H7C1D1 291 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 STAT1P42224 750 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 PHLDB3Q6NSJ2 640 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 NSMFQ6X4W1 530 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 FAM89AQ96GI7 184 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 IFIH1Q9BYX4 1025 aaKnown RBP7.12□□□□□ -1.27
UPF2-201ENST00000356352 MAGEF1Q9HAY2 307 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 JAG2Q9Y219 1238 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 GOLGA8KD6RF30 607 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 CFBP00751 764 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 PDE6CP51160 858 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 BEND3Q5T5X7 828 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 ARHGEF16Q5VV41 709 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 KRT40Q6A162 431 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 KLHL7Q8IXQ5 586 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.12□□□□□ -1.27
UPF2-201ENST00000356352 IFT122Q9HBG6 1241 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 C1orf112Q9NSG2 853 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 TAB2Q9NYJ8 693 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 A0A1W2PP64 1363 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 SSH2Q76I76 1423 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 S100BP04271 92 aaPredicted RBP7.12□□□□□ -1.27
UPF2-201ENST00000356352 PCP11498 1178 aaKnown RBP7.12□□□□□ -1.27
UPF2-201ENST00000356352 MAN1A1P33908 653 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 GABPB1Q06547 395 aaPredicted RBP7.12□□□□□ -1.27
UPF2-201ENST00000356352 PRPSAP1Q14558 356 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 PPP2R5DQ14738 602 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 ARHGEF6Q15052 776 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 USH1GQ495M9 461 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 FAM160B1Q5W0V3 765 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 RINT1Q6NUQ1 792 aa7.12□□□□□ -1.27
UPF2-201ENST00000356352 SMCR8Q8TEV9 937 aaPredicted RBP7.12□□□□□ -1.27
UPF2-201ENST00000356352 RILPQ96NA2 401 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms