RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NEDD1Q8NHV4 660 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 HOMER2Q9NSB8 354 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 NAV1Q8NEY1 1877 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 ASNSP08243 561 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 FAM83BQ5T0W9 1011 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 TMEM87BQ96K49 555 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 ANKRD1Q15327 319 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 USH1GQ495M9 461 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 WDR78Q5VTH9 848 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 SLFN13Q68D06 897 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 TMEM179Q6ZVK1 233 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 GPKOWQ92917 476 aaPredicted RBP eCLIP10.73□□□□□ -0.69
USP4-202ENST00000351842 KLRG1Q96E93 195 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 SLC10A4Q96EP9 437 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 KANSL2Q9H9L4 492 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 V9GY48 417 aaPredicted RBP10.73□□□□□ -0.69
USP4-202ENST00000351842 TMEM232C9JQI7 657 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 F5H6K3 240 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 IRF6O14896 467 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 GJB2P29033 226 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 GUCY1A2P33402 732 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 IREB2P48200 963 aaKnown RBP10.73□□□□□ -0.69
USP4-202ENST00000351842 AKAP17AQ02040 695 aaKnown RBP10.73□□□□□ -0.69
USP4-202ENST00000351842 KLRC3Q07444 240 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 PLS1Q14651 629 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 TSGA10IPQ3SY00 556 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 CHADLQ6NUI6 762 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 CCDC174Q6PII3 467 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.73□□□□□ -0.69
USP4-202ENST00000351842 UIMC1Q96RL1 719 aa10.73□□□□□ -0.69
USP4-202ENST00000351842 KIAA1755Q5JYT7 1200 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 FANCBQ8NB91 859 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 KCNB2Q92953 911 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 ARHGEF10LQ9HCE6 1279 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 GBA2Q9HCG7 927 aaPredicted RBP10.72□□□□□ -0.69
USP4-202ENST00000351842 CDK5RAP2Q96SN8 1893 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 MAST2Q6P0Q8 1798 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 PTPDC1A2A3K4 754 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 KLRF2D3W0D1 207 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 ST3GAL1Q11201 340 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 SEC23AQ15436 765 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 FKBP1CQ5VVH2 108 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 ARMC9Q7Z3E5 817 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 TICAM2Q86XR7 235 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 C2orf69Q8N8R5 385 aa10.72□□□□□ -0.69
USP4-202ENST00000351842 ORC3Q9UBD5 711 aaPredicted RBP10.72□□□□□ -0.69
USP4-202ENST00000351842 PHF20L1A8MW92 1017 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 NDUFB10O96000 172 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 PARP1P09874 1014 aaKnown RBP10.71□□□□□ -0.69
USP4-202ENST00000351842 NCLP19338 710 aaKnown RBP10.71□□□□□ -0.69
USP4-202ENST00000351842 ZNF157P51786 506 aaPredicted RBP10.71□□□□□ -0.69
USP4-202ENST00000351842 MAP3K9P80192 1104 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 FAM173BQ6P4H8 233 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 OPTNQ96CV9 577 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 CCDC17Q96LX7 622 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 HPS5Q9UPZ3 1129 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 ZMYM6O95789 1325 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 TOP1P11387 765 aaKnown RBP10.71□□□□□ -0.69
USP4-202ENST00000351842 CEBPZQ03701 1054 aaKnown RBP10.71□□□□□ -0.69
USP4-202ENST00000351842 TATDN1Q6P1N9 297 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 TMED8Q6PL24 325 aaPredicted RBP10.71□□□□□ -0.69
USP4-202ENST00000351842 HEATR3Q7Z4Q2 680 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 EHD4Q9H223 541 aa10.71□□□□□ -0.69
USP4-202ENST00000351842 H3BQV1 296 aa10.71□□□□□ -0.7
USP4-202ENST00000351842 KIF3CO14782 793 aa10.71□□□□□ -0.7
USP4-202ENST00000351842 FLOT1O75955 427 aa10.71□□□□□ -0.7
USP4-202ENST00000351842 IFFO2Q5TF58 517 aa10.71□□□□□ -0.7
USP4-202ENST00000351842 CST9Q5W186 159 aa10.71□□□□□ -0.7
USP4-202ENST00000351842 SIAH1Q8IUQ4 282 aa10.71□□□□□ -0.7
USP4-202ENST00000351842 ZC3H15Q8WU90 426 aaKnown RBP10.71□□□□□ -0.7
USP4-202ENST00000351842 PAGR1Q9BTK6 254 aa10.71□□□□□ -0.7
USP4-202ENST00000351842 RTN4Q9NQC3 1192 aaKnown RBP10.71□□□□□ -0.7
USP4-202ENST00000351842 KCNJ14Q9UNX9 436 aa10.71□□□□□ -0.7
USP4-202ENST00000351842 ZC3H4Q9UPT8 1303 aaKnown RBP10.71□□□□□ -0.7
USP4-202ENST00000351842 ATRNL1Q5VV63 1379 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 ECM29Q5VYK3 1845 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 PTPRAP18433 802 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 GNL2Q13823 731 aaKnown RBP10.7□□□□□ -0.7
USP4-202ENST00000351842 CPLX2Q6PUV4 134 aaKnown RBP10.7□□□□□ -0.7
USP4-202ENST00000351842 SCYL3Q8IZE3 742 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 GTF3C6Q969F1 213 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 VPS54Q9P1Q0 977 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 CTDP1Q9Y5B0 961 aaPredicted RBP10.7□□□□□ -0.7
USP4-202ENST00000351842 PSME4Q14997 1843 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 TROAPQ12815 778 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 PGAP2Q9UHJ9 254 aa10.7□□□□□ -0.7
USP4-202ENST00000351842 USP17L10C9JJH3 530 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 CTNND1O60716 968 aaKnown RBP10.69□□□□□ -0.7
USP4-202ENST00000351842 PDHBP11177 359 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 LARP1BQ659C4 914 aaKnown RBP10.69□□□□□ -0.7
USP4-202ENST00000351842 ZFP91Q96JP5 570 aaPredicted RBP10.69□□□□□ -0.7
USP4-202ENST00000351842 DDX60LQ5H9U9 1706 aaKnown RBP10.69□□□□□ -0.7
USP4-202ENST00000351842 EPB41L2O43491 1005 aaKnown RBP10.69□□□□□ -0.7
USP4-202ENST00000351842 ANKRD13AQ8IZ07 590 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 SRBD1Q8N5C6 995 aaKnown RBP10.69□□□□□ -0.7
USP4-202ENST00000351842 ZNF280CQ8ND82 737 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.69□□□□□ -0.7
USP4-202ENST00000351842 COA7Q96BR5 231 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 PIGSQ96S52 555 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 SNCAIPQ9Y6H5 919 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms