RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 HDAC4P56524 1084 aa19.33■□□□□ 0.69
SMAD4-201ENST00000342988 ZNF212Q9UDV6 495 aa19.33■□□□□ 0.69
SMAD4-201ENST00000342988 TBC1D9Q6ZT07 1266 aa19.33■□□□□ 0.68
SMAD4-201ENST00000342988 TMTC1Q8IUR5 882 aa19.33■□□□□ 0.68
SMAD4-201ENST00000342988 ZC3H12BQ5HYM0 836 aaKnown RBP19.33■□□□□ 0.68
SMAD4-201ENST00000342988 PODNQ7Z5L7 613 aa19.33■□□□□ 0.68
SMAD4-201ENST00000342988 ZNF622Q969S3 477 aaKnown RBP eCLIP19.33■□□□□ 0.68
SMAD4-201ENST00000342988 GPC4O75487 556 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 IL9RQ01113 521 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 ART3Q13508 389 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 PPP6R3Q5H9R7 873 aaPredicted RBP19.32■□□□□ 0.68
SMAD4-201ENST00000342988 GFM2Q969S9 779 aaKnown RBP19.32■□□□□ 0.68
SMAD4-201ENST00000342988 CLEC11AQ9Y240 323 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 ANKRD12Q6UB98 2062 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 LRPPRCP42704 1394 aaKnown RBP19.32■□□□□ 0.68
SMAD4-201ENST00000342988 H0YC42 278 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 CERS3Q8IU89 383 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 TBC1D2Q9BYX2 928 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 PIK3R4Q99570 1358 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 ITKQ08881 620 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 LRRC8BQ6P9F7 803 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 SMARCA5O60264 1052 aaPredicted RBP19.32■□□□□ 0.68
SMAD4-201ENST00000342988 IFT122Q9HBG6 1241 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 DACT1Q9NYF0 836 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 USTQ9Y2C2 406 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 EXOC5O00471 708 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 TRIM37O94972 964 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 NFKBIAP25963 317 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 HADHQ16836 314 aaKnown RBP19.32■□□□□ 0.68
SMAD4-201ENST00000342988 A0A1B0GVL5 298 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 TMEM232C9JQI7 657 aa19.32■□□□□ 0.68
SMAD4-201ENST00000342988 HARSP12081 509 aaKnown RBP19.31■□□□□ 0.68
SMAD4-201ENST00000342988 TMPOP42166 694 aaKnown RBP19.31■□□□□ 0.68
SMAD4-201ENST00000342988 SCYL3Q8IZE3 742 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 PARP1P09874 1014 aaKnown RBP19.31■□□□□ 0.68
SMAD4-201ENST00000342988 MAGEB6P1A0A0J9YX57 407 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 XPAP23025 273 aaPredicted RBP19.31■□□□□ 0.68
SMAD4-201ENST00000342988 ZSCAN26Q16670 478 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 KLC3Q6P597 504 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 NYXQ9GZU5 481 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 RAB20Q9NX57 234 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 PPP4R4Q6NUP7 873 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 LARP6Q9BRS8 491 aaKnown RBP19.31■□□□□ 0.68
SMAD4-201ENST00000342988 ARHGEF10LQ9HCE6 1279 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 EFCAB13Q8IY85 973 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 APOA1P02647 267 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 ATF7P17544 494 aaPredicted RBP19.31■□□□□ 0.68
SMAD4-201ENST00000342988 POGZQ7Z3K3 1410 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 BBS5Q8N3I7 341 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 HOOK2Q96ED9 719 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 COG4Q9H9E3 785 aa19.31■□□□□ 0.68
SMAD4-201ENST00000342988 CHCHD3Q9NX63 227 aaKnown RBP19.3■□□□□ 0.68
SMAD4-201ENST00000342988 KIF17Q9P2E2 1029 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 ANKRD50Q9ULJ7 1429 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 ZKSCAN8Q15776 578 aaPredicted RBP19.3■□□□□ 0.68
SMAD4-201ENST00000342988 Q6ZUG5 572 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 FGFR1OP2Q9NVK5 253 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 ARHGEF35A5YM69 484 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 GJC2Q5T442 439 aaPredicted RBP19.3■□□□□ 0.68
SMAD4-201ENST00000342988 NBPF5PQ86XG9 351 aaPredicted RBP19.3■□□□□ 0.68
SMAD4-201ENST00000342988 MTBPQ96DY7 904 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 CYP7A1P22680 504 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 RNASE9P60153 205 aaKnown RBP19.3■□□□□ 0.68
SMAD4-201ENST00000342988 TRIM58Q8NG06 486 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 CARSP49589 748 aaKnown RBP19.3■□□□□ 0.68
SMAD4-201ENST00000342988 MPRIPQ6WCQ1 1025 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 EPAS1Q99814 870 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 INHBAP08476 426 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 GRM1Q13255 1194 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 TSTA3Q13630 321 aaPredicted RBP19.3■□□□□ 0.68
SMAD4-201ENST00000342988 SFMBT2Q5VUG0 894 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 RNF217Q8TC41 542 aa19.3■□□□□ 0.68
SMAD4-201ENST00000342988 PPARGP37231 505 aaPredicted RBP19.3■□□□□ 0.68
SMAD4-201ENST00000342988 STX18Q9P2W9 335 aaKnown RBP19.29■□□□□ 0.68
SMAD4-201ENST00000342988 PRR23D1E9PI22 279 aaPredicted RBP19.29■□□□□ 0.68
SMAD4-201ENST00000342988 PRR23D2P0DMB1 279 aaPredicted RBP19.29■□□□□ 0.68
SMAD4-201ENST00000342988 MED21Q13503 144 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 BRD3Q15059 726 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 PPP2R5AQ15172 486 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 ATP6V1E2Q96A05 226 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 TMCC1O94876 653 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 CAPS2Q9BXY5 557 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 MRPL40Q9NQ50 206 aaKnown RBP19.29■□□□□ 0.68
SMAD4-201ENST00000342988 CAPN11Q9UMQ6 739 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 DAB2P98082 770 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 TMEM132EQ6IEE7 984 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 JPH4Q96JJ6 628 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 MRPL44Q9H9J2 332 aaKnown RBP19.29■□□□□ 0.68
SMAD4-201ENST00000342988 ADCY8P40145 1251 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 SLMAPQ14BN4 828 aa19.29■□□□□ 0.68
SMAD4-201ENST00000342988 PPP1R12AO14974 1030 aaPredicted RBP19.28■□□□□ 0.68
SMAD4-201ENST00000342988 PHF21AQ96BD5 680 aa19.28■□□□□ 0.68
SMAD4-201ENST00000342988 OTUB1Q96FW1 271 aaPredicted RBP19.28■□□□□ 0.68
SMAD4-201ENST00000342988 MED10Q9BTT4 135 aa19.28■□□□□ 0.68
SMAD4-201ENST00000342988 OAS2P29728 719 aaKnown RBP19.28■□□□□ 0.68
SMAD4-201ENST00000342988 PYGBP11216 843 aa19.28■□□□□ 0.68
SMAD4-201ENST00000342988 WAPLQ7Z5K2 1190 aa19.28■□□□□ 0.68
SMAD4-201ENST00000342988 AZI2Q9H6S1 392 aa19.28■□□□□ 0.68
SMAD4-201ENST00000342988 DACH2Q96NX9 599 aa19.28■□□□□ 0.68
SMAD4-201ENST00000342988 LMCD1Q9NZU5 365 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms