RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 WTAPQ15007 396 aa25.33■■□□□ 1.65
TRIM28-202ENST00000341753 TTF1Q15361 905 aaPredicted RBP25.33■■□□□ 1.65
TRIM28-202ENST00000341753 FILIP1LQ4L180 1135 aa25.33■■□□□ 1.65
TRIM28-202ENST00000341753 CRACR2BQ8N4Y2 399 aaPredicted RBP25.33■■□□□ 1.65
TRIM28-202ENST00000341753 ZNF579Q8NAF0 562 aaKnown RBP25.33■■□□□ 1.65
TRIM28-202ENST00000341753 VPS54Q9P1Q0 977 aa25.33■■□□□ 1.65
TRIM28-202ENST00000341753 MYH7P12883 1935 aa25.33■■□□□ 1.65
TRIM28-202ENST00000341753 LRP6O75581 1613 aa25.33■■□□□ 1.65
TRIM28-202ENST00000341753 POTEB2H3BUK9 544 aa25.33■■□□□ 1.64
TRIM28-202ENST00000341753 PRDM1O75626 825 aa25.33■■□□□ 1.64
TRIM28-202ENST00000341753 MFSD6Q6ZSS7 791 aa25.33■■□□□ 1.64
TRIM28-202ENST00000341753 PPP1R3GB7ZBB8 358 aa25.32■■□□□ 1.64
TRIM28-202ENST00000341753 SKIDA1Q1XH10 827 aa25.32■■□□□ 1.64
TRIM28-202ENST00000341753 NOM1Q5C9Z4 860 aaKnown RBP25.32■■□□□ 1.64
TRIM28-202ENST00000341753 TFR2Q9UP52 801 aa25.32■■□□□ 1.64
TRIM28-202ENST00000341753 ARHGAP25P42331 645 aa25.32■■□□□ 1.64
TRIM28-202ENST00000341753 AKNAD1Q5T1N1 836 aa25.32■■□□□ 1.64
TRIM28-202ENST00000341753 NUP88Q99567 741 aaPredicted RBP25.32■■□□□ 1.64
TRIM28-202ENST00000341753 TAB2Q9NYJ8 693 aa25.32■■□□□ 1.64
TRIM28-202ENST00000341753 ABCC12Q96J65 1359 aa25.32■■□□□ 1.64
TRIM28-202ENST00000341753 PATL2C9JE40 543 aaKnown RBP25.31■■□□□ 1.64
TRIM28-202ENST00000341753 N4BP3O15049 544 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 DEXIO95424 95 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 ATP6V1AP38606 617 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 CNGA4Q8IV77 575 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 AKAP11Q9UKA4 1901 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 ENC1O14682 589 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 HSP90B2PQ58FF3 399 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 INTS5Q6P9B9 1019 aaKnown RBP25.31■■□□□ 1.64
TRIM28-202ENST00000341753 SMIM5Q71RC9 77 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 ZNF34Q8IZ26 560 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 GDAP1L1Q96MZ0 367 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 TTF2Q9UNY4 1162 aaKnown RBP25.31■■□□□ 1.64
TRIM28-202ENST00000341753 CEP131Q9UPN4 1083 aa25.31■■□□□ 1.64
TRIM28-202ENST00000341753 IL6STP40189 918 aaPredicted RBP25.3■■□□□ 1.64
TRIM28-202ENST00000341753 KCNQ4P56696 695 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 AKAP17AQ02040 695 aaKnown RBP25.3■■□□□ 1.64
TRIM28-202ENST00000341753 KRT31Q15323 416 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 HDAC6Q9UBN7 1215 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 TDO2P48775 406 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 ABHD10Q9NUJ1 306 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 GUCA1BQ9UMX6 200 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 MAPK8IP1Q9UQF2 711 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 ATRNO75882 1429 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 NUP98P52948 1817 aa25.3■■□□□ 1.64
TRIM28-202ENST00000341753 TRIM75PA6NK02 468 aa25.29■■□□□ 1.64
TRIM28-202ENST00000341753 NUTM2BA6NNL0 878 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-202ENST00000341753 NUTM2EB1AL46 878 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-202ENST00000341753 SMIM22K7EJ46 135 aa25.29■■□□□ 1.64
TRIM28-202ENST00000341753 CRKLP46109 303 aaKnown RBP25.29■■□□□ 1.64
TRIM28-202ENST00000341753 CHP1Q99653 195 aa25.29■■□□□ 1.64
TRIM28-202ENST00000341753 IQSEC3Q9UPP2 1182 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-202ENST00000341753 ZNF174Q15697 407 aa25.29■■□□□ 1.64
TRIM28-202ENST00000341753 GSG1L2A8MUP6 293 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 ITPK1Q13572 414 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 IQUBQ8NA54 791 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 IPO4Q8TEX9 1081 aaKnown RBP25.28■■□□□ 1.64
TRIM28-202ENST00000341753 CTAGE1Q96RT6 745 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 FAM204AQ9H8W3 233 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 MYO6Q9UM54 1294 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 FANCBQ8NB91 859 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 WTIPA6NIX2 430 aaPredicted RBP25.28■■□□□ 1.64
TRIM28-202ENST00000341753 CERS3Q8IU89 383 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 ZNF654Q8IZM8 581 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 LCORLQ8N3X6 602 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 MIGA1Q8NAN2 632 aa25.28■■□□□ 1.64
TRIM28-202ENST00000341753 AATFQ9NY61 560 aaKnown RBP eCLIP25.28■■□□□ 1.644e-7■■■■□ 19.6
TRIM28-202ENST00000341753 ERICH2A1L162 156 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 ZMYND10O75800 440 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 EIF5P55010 431 aaKnown RBP25.27■■□□□ 1.64
TRIM28-202ENST00000341753 RASGRF1Q13972 1273 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 WHAMMP3Q1A5X7 153 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 RRAGBQ5VZM2 374 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 SRGAP2O75044 1071 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 KRT9P35527 623 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 PUM3Q15397 648 aaKnown RBP25.27■■□□□ 1.64
TRIM28-202ENST00000341753 DDB1Q16531 1140 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 SH3RF1Q7Z6J0 888 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 TMTC1Q8IUR5 882 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 KRT23Q9C075 422 aa25.27■■□□□ 1.64
TRIM28-202ENST00000341753 ERVV-1B6SEH8 477 aa25.26■■□□□ 1.63
TRIM28-202ENST00000341753 PIP4K2BP78356 416 aa25.26■■□□□ 1.63
TRIM28-202ENST00000341753 SART3Q15020 963 aaKnown RBP25.26■■□□□ 1.63
TRIM28-202ENST00000341753 LRRC31Q6UY01 552 aa25.26■■□□□ 1.63
TRIM28-202ENST00000341753 MYH8P13535 1937 aa25.26■■□□□ 1.63
TRIM28-202ENST00000341753 IVLP07476 585 aa25.26■■□□□ 1.63
TRIM28-202ENST00000341753 BCAMP50895 628 aa25.26■■□□□ 1.63
TRIM28-202ENST00000341753 MARCH10Q8NA82 808 aaPredicted RBP25.26■■□□□ 1.63
TRIM28-202ENST00000341753 RIN2Q8WYP3 895 aaPredicted RBP25.26■■□□□ 1.63
TRIM28-202ENST00000341753 CNNM2Q9H8M5 875 aa25.26■■□□□ 1.63
TRIM28-202ENST00000341753 SLC4A4Q9Y6R1 1079 aa25.26■■□□□ 1.63
TRIM28-202ENST00000341753 KCNQ2O43526 872 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 ALX1Q15699 326 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 FAM71BQ8TC56 605 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 CAPZA3Q96KX2 299 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 HINFPQ9BQA5 517 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 CCDC87Q9NVE4 849 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 AMPD2Q01433 879 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 CYP26C1Q6V0L0 522 aa25.25■■□□□ 1.63
TRIM28-202ENST00000341753 SPATA5Q8NB90 893 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms