RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 PGAP2Q9UHJ9 254 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 ZDHHC9Q9Y397 364 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 IGKV6D-41A0A0C4DH26 115 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 PDCP20941 246 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 PRKG1Q13976 671 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 TRIM22Q8IYM9 498 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 FAM217BQ9NTX9 383 aaPredicted RBP11.66□□□□□ -0.54
HMGB3-201ENST00000325307 RBM28Q9NW13 759 aaKnown RBP11.66□□□□□ -0.54
HMGB3-201ENST00000325307 PRDM4Q9UKN5 801 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 PPP2R3BQ9Y5P8 575 aa11.66□□□□□ -0.54
HMGB3-201ENST00000325307 PITPNM2Q9BZ72 1349 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 SIPA1L1O43166 1804 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 ADM5C9JUS6 153 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 EEF2P13639 858 aaKnown RBP11.65□□□□□ -0.54
HMGB3-201ENST00000325307 SYT1P21579 422 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 AKAP17AQ02040 695 aaKnown RBP11.65□□□□□ -0.54
HMGB3-201ENST00000325307 SSRP1Q08945 709 aaKnown RBP11.65□□□□□ -0.54
HMGB3-201ENST00000325307 PPP2R5BQ15173 497 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 H3BQV1 296 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 JAG1P78504 1218 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 SUPT20HL1Q3ZLR7 823 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 IFFO2Q5TF58 517 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 SMARCC2Q8TAQ2 1214 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 ZNF526Q8TF50 670 aaPredicted RBP11.65□□□□□ -0.54
HMGB3-201ENST00000325307 ZBTB21Q9ULJ3 1066 aa11.65□□□□□ -0.54
HMGB3-201ENST00000325307 STX6O43752 255 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 CAP2P40123 477 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 PNMA8AQ86V59 439 aaPredicted RBP11.64□□□□□ -0.55
HMGB3-201ENST00000325307 PIBF1Q8WXW3 757 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 PLEKHA8P1O95397 391 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 GOLGA8HP0CJ92 632 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 TCHHQ07283 1943 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 DLK2Q6UY11 383 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 IPO4Q8TEX9 1081 aaKnown RBP11.64□□□□□ -0.55
HMGB3-201ENST00000325307 ZNF341Q9BYN7 854 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 PARP1P09874 1014 aaKnown RBP11.64□□□□□ -0.55
HMGB3-201ENST00000325307 RASGRP2Q7LDG7 609 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 USP48Q86UV5 1035 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.64□□□□□ -0.55
HMGB3-201ENST00000325307 FZD1Q9UP38 647 aa11.64□□□□□ -0.55
HMGB3-201ENST00000325307 WDR33Q9C0J8 1336 aaKnown RBP11.63□□□□□ -0.55
HMGB3-201ENST00000325307 ASNSP08243 561 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 IFNAR1P17181 557 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 GUCY1A2P33402 732 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 CCDC96Q2M329 555 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 USP17L2Q6R6M4 530 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 WRNIP1Q96S55 665 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 ARHGEF10LQ9HCE6 1279 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 NYAP2Q9P242 653 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 USP17L5A8MUK1 530 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 TRAK2O60296 914 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 GRM4Q14833 912 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 NTRK3Q16288 839 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 TMTC3Q6ZXV5 915 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 STAG2Q8N3U4 1231 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 ZC3H15Q8WU90 426 aaKnown RBP11.63□□□□□ -0.55
HMGB3-201ENST00000325307 RRAGCQ9HB90 399 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 NID2Q14112 1375 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 FRMPD2Q68DX3 1309 aaPredicted RBP11.63□□□□□ -0.55
HMGB3-201ENST00000325307 FDPSP14324 419 aaKnown RBP11.63□□□□□ -0.55
HMGB3-201ENST00000325307 GNAQP50148 359 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 GUCY1B3Q02153 619 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 MAP3K10Q02779 954 aa11.63□□□□□ -0.55
HMGB3-201ENST00000325307 hCG_1642624A0A1W2PR95 340 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 DDX11L8A8MPP1 907 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 POTECB2RU33 542 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 VEGFAP15692 232 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 INPP5BP32019 993 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 NOVP48745 357 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 FOXD4L6Q3SYB3 417 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 FOXD4L3Q6VB84 417 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 CCDC84Q86UT8 332 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 C8orf76Q96K31 380 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 ALG1Q9BT22 464 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 PHF20L1A8MW92 1017 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 KLRF2D3W0D1 207 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 FMNL1O95466 1100 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 NF2P35240 595 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 ZYXQ15942 572 aaKnown RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 FEZ1Q99689 392 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 GLIS2Q9BZE0 524 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 GPCPD1Q9NPB8 672 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 MAD2L2Q9UI95 211 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 V9GY48 417 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 CTNND1O60716 968 aaKnown RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 PDHBP11177 359 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 TRIM29Q14134 588 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 TTLL12Q14166 644 aaPredicted RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 MCTP1Q6DN14 999 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 SRBD1Q8N5C6 995 aaKnown RBP11.62□□□□□ -0.55
HMGB3-201ENST00000325307 WASF1Q92558 559 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 AIFM3Q96NN9 605 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 MAP3K14Q99558 947 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 PICK1Q9NRD5 415 aa11.62□□□□□ -0.55
HMGB3-201ENST00000325307 BRD1O95696 1058 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 ZSCAN22P10073 491 aaPredicted RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 SLC1A4P43007 532 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 SLFN13Q68D06 897 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 ACER1Q8TDN7 264 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 ZKSCAN4Q969J2 545 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms