RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 NBPF3Q9H094 633 aa12.98□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 RPAP3Q9H6T3 665 aaPredicted RBP12.98□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 INCENPQ9NQS7 918 aa12.98□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 MTMR4Q9NYA4 1195 aa12.98□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 CLIP2Q9UDT6 1046 aa12.98□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 STX8Q9UNK0 236 aa12.98□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 ZSWIM8A7E2V4 1837 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 A0A0G2JMZ2 1700 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 B4E1Z4 1266 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L15C9J2P7 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L13C9JLJ4 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L11C9JVI0 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L18D6R9N7 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L22D6RA61 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L17D6RBQ6 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L19D6RCP7 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L20D6RJB6 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 WDR46O15213 610 aaKnown RBP12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 REC8O95072 547 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 CYP21A2P08686 494 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 HOXA7P31268 230 aaPredicted RBP12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 USP17L24Q0WX57 530 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 KIF22Q14807 665 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 CCDC178Q5BJE1 867 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 LRRC47Q8N1G4 583 aaKnown RBP12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 ZNF296Q8WUU4 475 aaPredicted RBP12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 ERO1AQ96HE7 468 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 ASCC2Q9H1I8 757 aaPredicted RBP12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 ISY1Q9ULR0 285 aaKnown RBP12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 SYNPO2Q9UMS6 1093 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 RLFQ13129 1914 aa12.97□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 KDM4AO75164 1064 aa12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 GCLCP48506 637 aaPredicted RBP12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 SP3Q02447 781 aa12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 SPICE1Q8N0Z3 855 aa12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 NCOA7Q8NI08 942 aa12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 UBAC1Q9BSL1 405 aa12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 R3HDMLQ9H3Y0 253 aa12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 CPA4Q9UI42 421 aa12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 TACC3Q9Y6A5 838 aa12.96□□□□□ -0.33
CSPG4P1Y-201ENST00000306641 PCNTO95613 3336 aa12.96□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 MYH6P13533 1939 aa12.96□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ADGRA2Q96PE1 1338 aa12.95□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 EIF5BO60841 1220 aaKnown RBP12.95□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ARHGEF6Q15052 776 aa12.95□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CATSPERGQ6ZRH7 1159 aa12.95□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 SIAH1Q8IUQ4 282 aa12.95□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 TCP11L1Q9NUJ3 509 aa12.95□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ERICH2A1L162 156 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 E7EWF7 191 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 F5H6K3 240 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 SLC27A2O14975 620 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 NMT2O60551 498 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 FLOT1O75955 427 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 NDUFB10O96000 172 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 TOP1P11387 765 aaKnown RBP12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ZKSCAN1P17029 563 aaPredicted RBP12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 HERVK_113P62684 666 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 KLRC3Q07444 240 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 SART3Q15020 963 aaKnown RBP12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 FAM110CQ1W6H9 321 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 FAM83BQ5T0W9 1011 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CREB3L3Q68CJ9 461 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 SLFN13Q68D06 897 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 C17orf99Q6UX52 265 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ANKRD13CQ8N6S4 541 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 GMCL1P1Q8NEA9 526 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CD99L2Q8TCZ2 262 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 MKL1Q969V6 931 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ZKSCAN3Q9BRR0 538 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 PAGR1Q9BTK6 254 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 IL17RBQ9NRM6 502 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 MTMR7Q9Y216 660 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 PLXNB2O15031 1838 aa12.94□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 TNKSO95271 1327 aa12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 MCCP23508 829 aa12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 LACTBP83111 547 aaPredicted RBP12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 IKQ13123 557 aaPredicted RBP12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 COG2Q14746 738 aa12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 TTC14Q96N46 770 aa12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ZSCAN10Q96SZ4 725 aaPredicted RBP12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 P2RX7Q99572 595 aaKnown RBP12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 GTF3C3Q9Y5Q9 886 aa12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 DOCK3Q8IZD9 2030 aa12.93□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 MYPNQ86TC9 1320 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 ECM2O94769 699 aaPredicted RBP12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 BCRP11274 1271 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 BMP3P12645 472 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 SLC1A4P43007 532 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 FCGRTP55899 365 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 KRT32Q14532 448 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 NECTIN1Q15223 517 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CCDC96Q2M329 555 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 KIAA1755Q5JYT7 1200 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 IFIT1BQ5T764 474 aaKnown RBP12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CTU1Q7Z7A3 348 aaKnown RBP12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 DGKHQ86XP1 1220 aa12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 CCAR1Q8IX12 1150 aaKnown RBP12.92□□□□□ -0.34
CSPG4P1Y-201ENST00000306641 TMEM47Q9BQJ4 181 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms