RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 CNTNAP1P78357 1384 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 GPR75-ASB3A0A0A6YYF3 556 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 WNT10BO00744 389 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 SGSM2O43147 1006 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 WDHD1O75717 1129 aaPredicted RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 RPS12P25398 132 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 LMOD1P29536 600 aaPredicted RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 EPHX2P34913 555 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 HAND2P61296 217 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 COL9A3Q14050 684 aaPredicted RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 DLGAP5Q15398 846 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 SHROOM1Q2M3G4 852 aaPredicted RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 LINC01559Q495D7 138 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 ANGEL2Q5VTE6 544 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 TGFBRAP1Q8WUH2 860 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 AIDAQ96BJ3 306 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 TAF1DQ9H5J8 278 aaPredicted RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 USP40Q9NVE5 1235 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 ZNF70Q9UC06 446 aaPredicted RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 HACL1Q9UJ83 578 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 TACC3Q9Y6A5 838 aa7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 BAZ2AQ9UIF9 1905 aaKnown RBP7.79□□□□□ -1.16
DEPDC4-201ENST00000299185 FLT1P17948 1338 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 FOCADQ5VW36 1801 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 IRF6O14896 467 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 TOMM70O94826 608 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 GSTO1P78417 241 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 MAP1SQ66K74 1059 aaPredicted RBP7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 SH3BP5LQ7L8J4 393 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 ZNF511Q8NB15 262 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 SLC44A5Q8NCS7 719 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 DPF2Q92785 391 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 DYNLL2Q96FJ2 89 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 ZDHHC15Q96MV8 337 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 STRBPQ96SI9 672 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 GLIS2Q9BZE0 524 aaPredicted RBP7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 TMEM39BQ9GZU3 492 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 LSG1Q9H089 658 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 ANO2Q9NQ90 1003 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 SERPINA10Q9UK55 444 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 HDAC9Q9UKV0 1011 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 SLC4A4Q9Y6R1 1079 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 RAD50Q92878 1312 aa7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 ZC3H4Q9UPT8 1303 aaKnown RBP7.78□□□□□ -1.16
DEPDC4-201ENST00000299185 RPAP1Q9BWH6 1393 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 GSG1L2A8MUP6 293 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 H7C1D1 291 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 TRAF5O00463 557 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 PPFIA3O75145 1194 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 UPP2O95045 317 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 ZFYP08048 801 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 USP5P45974 858 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 CTDSPL2Q05D32 466 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 KCNH2Q12809 1159 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 MCMDC2Q4G0Z9 681 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 ZSCAN25Q6NSZ9 544 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 HHIPL2Q6UWX4 724 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 TBC1D10CQ8IV04 446 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 FAM174AQ8TBP5 190 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 NOL10Q9BSC4 688 aaKnown RBP7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 KLF16Q9BXK1 252 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 INCENPQ9NQS7 918 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 HELLSQ9NRZ9 838 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 ADARB2Q9NS39 739 aaKnown RBP7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 PALD1Q9ULE6 856 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 PCDHGC3Q9UN70 934 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 SUGT1Q9Y2Z0 365 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 LAMA4Q16363 1823 aa7.77□□□□□ -1.17
DEPDC4-201ENST00000299185 SCN4AP35499 1836 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 DDTLA6NHG4 134 aaPredicted RBP7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 IGHA1P01876 353 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 APPP05067 770 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 LDHCP07864 332 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 FDX1P10109 184 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 HSPD1P10809 573 aaKnown RBP7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 TDO2P48775 406 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 STOX1Q6ZVD7 989 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 CLEC10AQ8IUN9 316 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 OGFOD1Q8N543 542 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 CRNKL1Q9BZJ0 848 aaKnown RBP7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 OSBPL5Q9H0X9 879 aaPredicted RBP7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 DNAJC18Q9H819 358 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 DCP1AQ9NPI6 582 aaPredicted RBP7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 RBM8AQ9Y5S9 174 aaKnown RBP7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 NEDD4P46934 1319 aa7.76□□□□□ -1.17
DEPDC4-201ENST00000299185 ATRNL1Q5VV63 1379 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 HIP1O00291 1037 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 PRDM1O75626 825 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 CPA1P15085 419 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 CLCN1P35523 988 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 HDLBPQ00341 1268 aaKnown RBP7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 PRKG1Q13976 671 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 RASA3Q14644 834 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 RRP1BQ14684 758 aaKnown RBP7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 MOB2Q70IA6 237 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 CCDC84Q86UT8 332 aaPredicted RBP7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 USP48Q86UV5 1035 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 MTMR14Q8NCE2 650 aa7.75□□□□□ -1.17
DEPDC4-201ENST00000299185 MCM9Q9NXL9 1143 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms