RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 RASGRP2Q7LDG7 609 aa16.6■□□□□ 0.25
CCNF-201ENST00000293968 UBXN6Q9BZV1 441 aa16.6■□□□□ 0.25
CCNF-201ENST00000293968 ABHD10Q9NUJ1 306 aa16.6■□□□□ 0.25
CCNF-201ENST00000293968 ERVV-2B6SEH9 535 aa16.6■□□□□ 0.25
CCNF-201ENST00000293968 PLEKHA8P1O95397 391 aa16.6■□□□□ 0.25
CCNF-201ENST00000293968 TMTC2Q8N394 836 aa16.6■□□□□ 0.25
CCNF-201ENST00000293968 LPIN2Q92539 896 aa16.6■□□□□ 0.25
CCNF-201ENST00000293968 CRACR2AQ9BSW2 395 aa16.6■□□□□ 0.25
CCNF-201ENST00000293968 MATR3P43243 847 aaKnown RBP eCLIP16.59■□□□□ 0.25
CCNF-201ENST00000293968 WHAMMP3Q1A5X7 153 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 NT5DC1Q5TFE4 455 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 NLRP10Q86W26 655 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 GSPT2Q8IYD1 628 aaKnown RBP16.59■□□□□ 0.25
CCNF-201ENST00000293968 ZNF579Q8NAF0 562 aaKnown RBP16.59■□□□□ 0.25
CCNF-201ENST00000293968 ESR2Q92731 530 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 JADE2Q9NQC1 790 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 MAP2K7O14733 419 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 FKBP15Q5T1M5 1219 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 CTR9Q6PD62 1173 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 IQUBQ8NA54 791 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 SMARCC1Q92922 1105 aaPredicted RBP16.59■□□□□ 0.25
CCNF-201ENST00000293968 CSF1RP07333 972 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 PPARAQ07869 468 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 DPYDQ12882 1025 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 CUL4BQ13620 913 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 L1RE1Q9UN81 338 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 GDAQ9Y2T3 454 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 MACROD2A1Z1Q3 448 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 SRLQ86TD4 932 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 GSDMAQ96QA5 445 aa16.59■□□□□ 0.25
CCNF-201ENST00000293968 AATFQ9NY61 560 aaKnown RBP eCLIP16.59■□□□□ 0.25
CCNF-201ENST00000293968 MAGEC2Q9UBF1 373 aaPredicted RBP16.59■□□□□ 0.25
CCNF-201ENST00000293968 EPN1Q9Y6I3 576 aaPredicted RBP16.59■□□□□ 0.25
CCNF-201ENST00000293968 PPP1R3GB7ZBB8 358 aa16.58■□□□□ 0.25
CCNF-201ENST00000293968 RNF225M0QZC1 329 aaPredicted RBP16.58■□□□□ 0.25
CCNF-201ENST00000293968 IL2RBP14784 551 aa16.58■□□□□ 0.25
CCNF-201ENST00000293968 LUC7L2Q9Y383 392 aaKnown RBP16.58■□□□□ 0.25
CCNF-201ENST00000293968 MYH15Q9Y2K3 1946 aa16.58■□□□□ 0.24
CCNF-201ENST00000293968 WNT7AO00755 349 aa16.58■□□□□ 0.24
CCNF-201ENST00000293968 RIN2Q8WYP3 895 aaPredicted RBP16.58■□□□□ 0.24
CCNF-201ENST00000293968 KAT6BQ8WYB5 2073 aa16.58■□□□□ 0.24
CCNF-201ENST00000293968 TRIM49BA6NDI0 452 aa16.58■□□□□ 0.24
CCNF-201ENST00000293968 RNF40O75150 1001 aa16.58■□□□□ 0.24
CCNF-201ENST00000293968 TRIM47Q96LD4 638 aa16.58■□□□□ 0.24
CCNF-201ENST00000293968 GNL3LQ9NVN8 582 aaKnown RBP16.58■□□□□ 0.24
CCNF-201ENST00000293968 LRRIQ3A6PVS8 624 aaPredicted RBP16.57■□□□□ 0.24
CCNF-201ENST00000293968 MRPS25P82663 173 aaKnown RBP16.57■□□□□ 0.24
CCNF-201ENST00000293968 TCRBV5S4A2TA0A5A2 114 aa16.57■□□□□ 0.24
CCNF-201ENST00000293968 GIGYF2Q6Y7W6 1299 aaKnown RBP16.57■□□□□ 0.24
CCNF-201ENST00000293968 STAT6P42226 847 aa16.57■□□□□ 0.24
CCNF-201ENST00000293968 CCDC51Q96ER9 411 aa16.57■□□□□ 0.24
CCNF-201ENST00000293968 TRIM21P19474 475 aaKnown RBP16.56■□□□□ 0.24
CCNF-201ENST00000293968 SPAG1Q07617 926 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 DNAJC21Q5F1R6 531 aaKnown RBP16.56■□□□□ 0.24
CCNF-201ENST00000293968 FAM71BQ8TC56 605 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 AFAP1L1Q8TED9 768 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 ZNHIT6Q9NWK9 470 aaKnown RBP16.56■□□□□ 0.24
CCNF-201ENST00000293968 IQCA1Q86XH1 822 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 FERMT2Q96AC1 680 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 PSMB7Q99436 277 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 MAP3K15Q6ZN16 1313 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 NDUFA10O95299 355 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 MSANTD4Q8NCY6 345 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 PDE8AO60658 829 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 TUBB2AQ13885 445 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 MAP9Q49MG5 647 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 CDKAL1Q5VV42 579 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 CTCFLQ8NI51 663 aaPredicted RBP16.56■□□□□ 0.24
CCNF-201ENST00000293968 HNRNPLLQ8WVV9 542 aaKnown RBP16.56■□□□□ 0.24
CCNF-201ENST00000293968 TUBB2BQ9BVA1 445 aa16.56■□□□□ 0.24
CCNF-201ENST00000293968 APTXQ7Z2E3 356 aaKnown RBP16.55■□□□□ 0.24
CCNF-201ENST00000293968 SAR1BQ9Y6B6 198 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 SOS2Q07890 1332 aaPredicted RBP16.55■□□□□ 0.24
CCNF-201ENST00000293968 TCP11X2Q5H9J9 407 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 ELOA2Q8IYF1 753 aaPredicted RBP16.55■□□□□ 0.24
CCNF-201ENST00000293968 STAG1Q8WVM7 1258 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 MMS19Q96T76 1030 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 RIC1Q4ADV7 1423 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 ATP1A1P05023 1023 aaKnown RBP16.55■□□□□ 0.24
CCNF-201ENST00000293968 DNA2P51530 1060 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 ALX1Q15699 326 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 CCDC70Q6NSX1 233 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 RNF26Q9BY78 433 aaPredicted RBP16.55■□□□□ 0.24
CCNF-201ENST00000293968 RAB21Q9UL25 225 aa16.55■□□□□ 0.24
CCNF-201ENST00000293968 C1orf167Q5SNV9 1468 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 ABCC12Q96J65 1359 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 MAGEB6P1A0A0J9YX57 407 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 TTC26A0AVF1 554 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 GNAT2P19087 354 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 OR8K1Q8NGG5 319 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 SLIT3O75094 1523 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 STIM1Q13586 685 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 PSD3Q9NYI0 1048 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 ARFGEF2Q9Y6D5 1785 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 RTL9Q8NET4 1388 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 ERCC3P19447 782 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 ARID4AP29374 1257 aaPredicted RBP16.54■□□□□ 0.24
CCNF-201ENST00000293968 DZIP3Q86Y13 1208 aaKnown RBP16.54■□□□□ 0.24
CCNF-201ENST00000293968 JAKMIP2Q96AA8 810 aa16.54■□□□□ 0.24
CCNF-201ENST00000293968 ZSCAN10Q96SZ4 725 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms