RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 TTC38Q5R3I4 469 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 ZNF34Q8IZ26 560 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 CEP131Q9UPN4 1083 aa10.36□□□□□ -0.75
MSH4-201ENST00000263187 CCDC152Q4G0S7 254 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 RASGRP2Q7LDG7 609 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 SLC35F6Q8N357 371 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 SRBD1Q8N5C6 995 aaKnown RBP10.35□□□□□ -0.75
MSH4-201ENST00000263187 ZNF512BQ96KM6 892 aaPredicted RBP10.35□□□□□ -0.75
MSH4-201ENST00000263187 ARFGAP3Q9NP61 516 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 FAM53CQ9NYF3 392 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 ADGRG1Q9Y653 693 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 GYPCP04921 128 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 XBP1P17861 261 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 HNRNPH2P55795 449 aaKnown RBP10.35□□□□□ -0.75
MSH4-201ENST00000263187 CHMP4BP1P59074 171 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 TICAM2Q86XR7 235 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 RNF41Q9H4P4 317 aaPredicted RBP10.35□□□□□ -0.75
MSH4-201ENST00000263187 GUCA1BQ9UMX6 200 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 STK36Q9NRP7 1315 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 TNS2Q63HR2 1409 aa10.35□□□□□ -0.75
MSH4-201ENST00000263187 A0A1B0GTH6 734 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 PPP1R3GB7ZBB8 358 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 KIF5CO60282 957 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 N4BP1O75113 896 aaKnown RBP10.34□□□□□ -0.75
MSH4-201ENST00000263187 KCNJ6P48051 423 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 KRT31Q15323 416 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 SEC23AQ15436 765 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 SPATA1Q5VX52 437 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 NCAPH2Q6IBW4 605 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 CHP1Q99653 195 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 IL17AQ16552 155 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 ERFEQ4G0M1 354 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 APTXQ7Z2E3 356 aaKnown RBP10.34□□□□□ -0.75
MSH4-201ENST00000263187 IQCA1Q86XH1 822 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 ZNF384Q8TF68 577 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 GOLGA1Q92805 767 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 UIMC1Q96RL1 719 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 PNKPQ96T60 521 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 MTRQ99707 1265 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 PODXL2Q9NZ53 605 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 HDAC6Q9UBN7 1215 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 ADD3Q9UEY8 706 aaKnown RBP10.34□□□□□ -0.75
MSH4-201ENST00000263187 LAMB4A4D0S4 1761 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 ZMYND10O75800 440 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 FILIP1LQ4L180 1135 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 CAPZA3Q96KX2 299 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 PHF20Q9BVI0 1012 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 PKD1L3Q7Z443 1732 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 XDHP47989 1333 aa10.34□□□□□ -0.75
MSH4-201ENST00000263187 H3BQF6 201 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 KCNQ2O43526 872 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 SRGAP2O75044 1071 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 LMAN1P49257 510 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 ERVK-24P63145 666 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 MRPS25P82663 173 aaKnown RBP10.33□□□□□ -0.76
MSH4-201ENST00000263187 UBXN1Q04323 297 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 LONRF2Q1L5Z9 754 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 NT5DC1Q5TFE4 455 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 INTS5Q6P9B9 1019 aaKnown RBP10.33□□□□□ -0.76
MSH4-201ENST00000263187 RGS22Q8NE09 1264 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 PDE11AQ9HCR9 933 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 MFAP3LO75121 409 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 GOLGA8HP0CJ92 632 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 GNAT2P19087 354 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 PRDX5P30044 214 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 IL6STP40189 918 aaPredicted RBP10.33□□□□□ -0.76
MSH4-201ENST00000263187 ITPK1Q13572 414 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 CTR9Q6PD62 1173 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 TMTC2Q8N394 836 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 NELFBQ8WX92 580 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 CELF1Q92879 486 aaKnown RBP10.33□□□□□ -0.76
MSH4-201ENST00000263187 DYNLL2Q96FJ2 89 aa10.33□□□□□ -0.76
MSH4-201ENST00000263187 SRRTQ9BXP5 876 aaKnown RBP10.33□□□□□ -0.76
MSH4-201ENST00000263187 TSPY2A6NKD2 308 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 ATRNO75882 1429 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 KRT9P35527 623 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 TROAPQ12815 778 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 KANK3Q6NY19 840 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 BCL9LQ86UU0 1499 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 STAG2Q8N3U4 1231 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 GPR161Q8N6U8 529 aaKnown RBP10.32□□□□□ -0.76
MSH4-201ENST00000263187 CTCFLQ8NI51 663 aaPredicted RBP10.32□□□□□ -0.76
MSH4-201ENST00000263187 RNF26Q9BY78 433 aaPredicted RBP10.32□□□□□ -0.76
MSH4-201ENST00000263187 BRMS1Q9HCU9 246 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 SHANK3Q9BYB0 1731 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 USP17L8P0C7I0 530 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 PMS1P54277 932 aaKnown RBP10.32□□□□□ -0.76
MSH4-201ENST00000263187 FKBP15Q5T1M5 1219 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 RIOK1Q9BRS2 568 aaKnown RBP10.32□□□□□ -0.76
MSH4-201ENST00000263187 CCDC87Q9NVE4 849 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 VPS18Q9P253 973 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 MYH7P12883 1935 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 VGLL3A8MV65 326 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 ERCC5P28715 1186 aaPredicted RBP10.32□□□□□ -0.76
MSH4-201ENST00000263187 TXLNAP40222 546 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 KLK7P49862 253 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 EIF5P55010 431 aaKnown RBP10.32□□□□□ -0.76
MSH4-201ENST00000263187 FUT2Q10981 343 aa10.32□□□□□ -0.76
MSH4-201ENST00000263187 RSRC2Q7L4I2 434 aaKnown RBP10.32□□□□□ -0.76
MSH4-201ENST00000263187 ZNF579Q8NAF0 562 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms