RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CCDC51Q96ER9 411 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 PRPF6O94906 941 aaKnown RBP21.19■□□□□ 0.98
UPF1-201ENST00000262803 C10orf67Q8IYJ2 551 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 TRPC6Q9Y210 931 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 LACTBP83111 547 aaPredicted RBP21.19■□□□□ 0.98
UPF1-201ENST00000262803 MTMR3Q13615 1198 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 ZBTB8OSQ8IWT0 167 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 STAMQ92783 540 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 USP28Q96RU2 1077 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 PKD2L1Q9P0L9 805 aa21.19■□□□□ 0.98
UPF1-201ENST00000262803 hCG_1642624A0A1W2PR95 340 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 EXOC3O60645 756 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 SMAP1Q8IYB5 467 aaPredicted RBP21.18■□□□□ 0.98
UPF1-201ENST00000262803 SLFN12Q8IYM2 578 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 TTC16Q8NEE8 873 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 NACA2Q9H009 215 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 KIAA1468Q9P260 1216 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 USP21Q9UK80 565 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 TRIM37O94972 964 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 SECISBP2LQ93073 1101 aaKnown RBP21.18■□□□□ 0.98
UPF1-201ENST00000262803 CNKSR1Q969H4 720 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 PCDHB13Q9Y5F0 798 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 KDM5AP29375 1690 aaKnown RBP21.18■□□□□ 0.98
UPF1-201ENST00000262803 RUFY4Q6ZNE9 571 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 KRT26Q7Z3Y9 468 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 RIOK1Q9BRS2 568 aaKnown RBP21.18■□□□□ 0.98
UPF1-201ENST00000262803 VPS54Q9P1Q0 977 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 HERC4Q5GLZ8 1057 aaPredicted RBP21.18■□□□□ 0.98
UPF1-201ENST00000262803 BEND3Q5T5X7 828 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 UTP14CQ5TAP6 766 aaKnown RBP21.18■□□□□ 0.98
UPF1-201ENST00000262803 DCUN1D2Q6PH85 259 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 MYCT1Q8N699 235 aa21.18■□□□□ 0.98
UPF1-201ENST00000262803 KDRP35968 1356 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 PNOCQ13519 176 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 DPY19L2Q6NUT2 758 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 CABP7Q86V35 215 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 PLCB1Q9NQ66 1216 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 NEO1Q92859 1461 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 RFX1P22670 979 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 HSPA2P54652 639 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 LONRF3Q496Y0 759 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 PLEKHF1Q96S99 279 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 RPS8P62241 208 aaKnown RBP21.17■□□□□ 0.98
UPF1-201ENST00000262803 AFAP1L1Q8TED9 768 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 CACYBPQ9HB71 228 aaKnown RBP21.17■□□□□ 0.98
UPF1-201ENST00000262803 PPIP5K2O43314 1243 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 PFKFB1P16118 471 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 RASA3Q14644 834 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 SERTAD1Q9UHV2 236 aa21.17■□□□□ 0.98
UPF1-201ENST00000262803 RNASE9P60153 205 aaKnown RBP21.16■□□□□ 0.98
UPF1-201ENST00000262803 GSDMBQ8TAX9 411 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 GTF2A1P52655 376 aaPredicted RBP21.16■□□□□ 0.98
UPF1-201ENST00000262803 NELFBQ8WX92 580 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 SEMA3EO15041 775 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 MAGEA1P43355 309 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 PDZD4Q76G19 769 aaPredicted RBP21.16■□□□□ 0.98
UPF1-201ENST00000262803 GPT2Q8TD30 523 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 NSMFQ6X4W1 530 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 B4GALNT4Q76KP1 1039 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 RPGRIP1Q96KN7 1286 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 SLF1Q9BQI6 1058 aa21.16■□□□□ 0.98
UPF1-201ENST00000262803 PFKFB2O60825 505 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 SMCR8Q8TEV9 937 aaPredicted RBP21.15■□□□□ 0.98
UPF1-201ENST00000262803 GCC2Q8IWJ2 1684 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 ABCD1P33897 745 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 ARHGAP24Q8N264 748 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 DEPTORQ8TB45 409 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.15■□□□□ 0.984e-6■■■□□ 14.7
UPF1-201ENST00000262803 CTTNBP2NLQ9P2B4 639 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 HOXA7P31268 230 aaPredicted RBP21.15■□□□□ 0.98
UPF1-201ENST00000262803 CTSWP56202 376 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 RGS12O14924 1447 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 GEN1Q17RS7 908 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 DYMQ7RTS9 669 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 CEP57Q86XR8 500 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 PLCD3Q8N3E9 789 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 SERPINA10Q9UK55 444 aa21.15■□□□□ 0.98
UPF1-201ENST00000262803 NT5C2P49902 561 aa21.14■□□□□ 0.98
UPF1-201ENST00000262803 MIER3Q7Z3K6 550 aa21.14■□□□□ 0.98
UPF1-201ENST00000262803 STMN2Q93045 179 aa21.14■□□□□ 0.98
UPF1-201ENST00000262803 SARNPP82979 210 aaKnown RBP21.14■□□□□ 0.98
UPF1-201ENST00000262803 ZNF654Q8IZM8 581 aa21.14■□□□□ 0.98
UPF1-201ENST00000262803 BLZF1Q9H2G9 400 aa21.14■□□□□ 0.98
UPF1-201ENST00000262803 HSPD1P10809 573 aaKnown RBP21.14■□□□□ 0.97
UPF1-201ENST00000262803 MAGEF1Q9HAY2 307 aa21.14■□□□□ 0.97
UPF1-201ENST00000262803 PPARAQ07869 468 aa21.14■□□□□ 0.97
UPF1-201ENST00000262803 SFMBT2Q5VUG0 894 aa21.14■□□□□ 0.97
UPF1-201ENST00000262803 MRPL44Q9H9J2 332 aaKnown RBP21.14■□□□□ 0.97
UPF1-201ENST00000262803 NOC2LQ9Y3T9 749 aaKnown RBP21.14■□□□□ 0.97
UPF1-201ENST00000262803 HPDP32754 393 aaPredicted RBP21.14■□□□□ 0.97
UPF1-201ENST00000262803 TTC31Q49AM3 519 aaPredicted RBP21.14■□□□□ 0.97
UPF1-201ENST00000262803 GAS2L3Q86XJ1 694 aa21.14■□□□□ 0.97
UPF1-201ENST00000262803 P3H4Q92791 437 aa21.14■□□□□ 0.97
UPF1-201ENST00000262803 USP40Q9NVE5 1235 aa21.14■□□□□ 0.97
UPF1-201ENST00000262803 SLAIN2Q9P270 581 aa21.14■□□□□ 0.97
UPF1-201ENST00000262803 BCAP29Q9UHQ4 241 aa21.14■□□□□ 0.97
UPF1-201ENST00000262803 PFDN6O15212 129 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 GAS7O60861 476 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 KRBA2Q6ZNG9 492 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 CHAMP1Q96JM3 812 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms