RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 KCNG1Q9UIX4 513 aa11.44□□□□□ -0.58
LIG3-201ENST00000262327 HOOK1Q9UJC3 728 aaKnown RBP11.44□□□□□ -0.58
LIG3-201ENST00000262327 V9GY48 417 aaPredicted RBP11.44□□□□□ -0.58
LIG3-201ENST00000262327 NTSR2O95665 410 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 CYP7A1P22680 504 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 SART3Q15020 963 aaKnown RBP11.43□□□□□ -0.58
LIG3-201ENST00000262327 TXNRD1Q16881 649 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 RILPL1Q5EBL4 403 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 PARD6BQ9BYG5 372 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 KRT23Q9C075 422 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 SPEF2Q9C093 1822 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 EFCAB8A8MWE9 144 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 DEXIO95424 95 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 FGFR2P21802 821 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 SARSP49591 514 aaKnown RBP11.43□□□□□ -0.58
LIG3-201ENST00000262327 AKAP17AQ02040 695 aaKnown RBP11.43□□□□□ -0.58
LIG3-201ENST00000262327 IGSF22Q8N9C0 903 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 MLKLQ8NB16 471 aa11.43□□□□□ -0.58
LIG3-201ENST00000262327 ENOX1Q8TC92 643 aaKnown RBP11.43□□□□□ -0.58
LIG3-201ENST00000262327 SYMPKQ92797 1274 aaKnown RBP11.43□□□□□ -0.58
LIG3-201ENST00000262327 STX10O60499 249 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 TBC1D8O95759 1140 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 RFC4P35249 363 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 DYNLL1P63167 89 aaKnown RBP11.42□□□□□ -0.58
LIG3-201ENST00000262327 MAP3K9P80192 1104 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 NR1I3Q14994 352 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 WASF1Q92558 559 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 KIFC2Q96AC6 838 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 NACAP1Q9BZK3 213 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 SRPRBQ9Y5M8 271 aaKnown RBP11.42□□□□□ -0.58
LIG3-201ENST00000262327 TNKSO95271 1327 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 ABCC12Q96J65 1359 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 AKR1B15C9JRZ8 316 aaPredicted RBP11.42□□□□□ -0.58
LIG3-201ENST00000262327 ADAMTS3O15072 1205 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 VEGFAP15692 232 aaPredicted RBP11.42□□□□□ -0.58
LIG3-201ENST00000262327 CASP14P31944 242 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 PPARAQ07869 468 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 DPYDQ12882 1025 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 ACRBPQ8NEB7 543 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 NYXQ9GZU5 481 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 FOXP1Q9H334 677 aaPredicted RBP11.42□□□□□ -0.58
LIG3-201ENST00000262327 MRFAP1Q9Y605 127 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 RGPD3A6NKT7 1758 aaPredicted RBP11.42□□□□□ -0.58
LIG3-201ENST00000262327 RGPD4Q7Z3J3 1758 aa11.42□□□□□ -0.58
LIG3-201ENST00000262327 TULP2O00295 520 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 NMT2O60551 498 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 APBA3O96018 575 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 OAS2P29728 719 aaKnown RBP11.41□□□□□ -0.58
LIG3-201ENST00000262327 GYG1P46976 350 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 CC2D1AQ6P1N0 951 aaPredicted RBP11.41□□□□□ -0.58
LIG3-201ENST00000262327 SAMD1Q6SPF0 538 aaPredicted RBP11.41□□□□□ -0.58
LIG3-201ENST00000262327 PROM2Q8N271 834 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 CNNM2Q9H8M5 875 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 CTNND2Q9UQB3 1225 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 LAMB2P55268 1798 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 RTL9Q8NET4 1388 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 MYH7P12883 1935 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 TRIM75PA6NK02 468 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 MMP14P50281 582 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 PLCD1P51178 756 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 ALX1Q15699 326 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 ZNF569Q5MCW4 686 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 WWC2Q6AWC2 1192 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 PPFIBP1Q86W92 1011 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 EEF2KMTQ96G04 330 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 PAGE5Q96GU1 130 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 ZNF512BQ96KM6 892 aaPredicted RBP11.41□□□□□ -0.58
LIG3-201ENST00000262327 CDC5LQ99459 802 aaKnown RBP11.41□□□□□ -0.58
LIG3-201ENST00000262327 VPS16Q9H269 839 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 SUGCTQ9HAC7 445 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 MTMR7Q9Y216 660 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 JAG2Q9Y219 1238 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 STK36Q9NRP7 1315 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 MYCNP04198 464 aaPredicted RBP11.41□□□□□ -0.58
LIG3-201ENST00000262327 SLC10A5Q5PT55 438 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 TBC1D9BQ66K14 1250 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 STAG1Q8WVM7 1258 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 SETDB2Q96T68 719 aa11.41□□□□□ -0.58
LIG3-201ENST00000262327 SRP68Q9UHB9 627 aaKnown RBP11.41□□□□□ -0.58
LIG3-201ENST00000262327 SYNRGQ9UMZ2 1314 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 RNF225M0QZC1 329 aaPredicted RBP11.4□□□□□ -0.58
LIG3-201ENST00000262327 FXR1P51114 621 aaKnown RBP eCLIP11.4□□□□□ -0.58
LIG3-201ENST00000262327 DHX8Q14562 1220 aaKnown RBP11.4□□□□□ -0.58
LIG3-201ENST00000262327 SRRTQ9BXP5 876 aaKnown RBP11.4□□□□□ -0.58
LIG3-201ENST00000262327 DACH1Q9UI36 760 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 UBR3Q6ZT12 1888 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 COL24A1Q17RW2 1714 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 MYH3P11055 1940 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 CCDC175P0C221 793 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 PKN1Q16512 942 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 SMIM5Q71RC9 77 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 APTXQ7Z2E3 356 aaKnown RBP11.4□□□□□ -0.58
LIG3-201ENST00000262327 ENAHQ8N8S7 591 aaPredicted RBP11.4□□□□□ -0.58
LIG3-201ENST00000262327 TFR2Q9UP52 801 aa11.4□□□□□ -0.58
LIG3-201ENST00000262327 MROH5Q6ZUA9 1318 aa11.4□□□□□ -0.59
LIG3-201ENST00000262327 TNS1Q9HBL0 1735 aaKnown RBP11.39□□□□□ -0.59
LIG3-201ENST00000262327 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.39□□□□□ -0.59
LIG3-201ENST00000262327 A0A1B0GTH6 734 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 PES1O00541 588 aaKnown RBP11.39□□□□□ -0.59
LIG3-201ENST00000262327 TUBB4AP04350 444 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms