RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 USP17L4A6NCW7 530 aa24.21■■□□□ 1.47
TRIM28-201ENST00000253024 USP17L1Q7RTZ2 530 aa24.21■■□□□ 1.47
TRIM28-201ENST00000253024 FXR1P51114 621 aaKnown RBP eCLIP24.21■■□□□ 1.471e-6■■■□□ 15.7
TRIM28-201ENST00000253024 FAM98CQ17RN3 349 aaKnown RBP24.21■■□□□ 1.47
TRIM28-201ENST00000253024 PIP4K2BP78356 416 aa24.2■■□□□ 1.46
TRIM28-201ENST00000253024 FUT2Q10981 343 aa24.2■■□□□ 1.46
TRIM28-201ENST00000253024 IL17AQ16552 155 aa24.2■■□□□ 1.46
TRIM28-201ENST00000253024 STX8Q9UNK0 236 aa24.2■■□□□ 1.46
TRIM28-201ENST00000253024 AKR1B15C9JRZ8 316 aaPredicted RBP24.2■■□□□ 1.46
TRIM28-201ENST00000253024 VAT1LQ9HCJ6 419 aa24.2■■□□□ 1.46
TRIM28-201ENST00000253024 XIRP1Q702N8 1843 aaKnown RBP24.2■■□□□ 1.46
TRIM28-201ENST00000253024 MYH3P11055 1940 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 N4BP3O15049 544 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 PPP2R3AQ06190 1150 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 LINC00116Q8NCU8 138 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 HINFPQ9BQA5 517 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 LRP6O75581 1613 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 NR1I3Q14994 352 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 PARP10Q53GL7 1025 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 TMCO3Q6UWJ1 677 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 MTRQ99707 1265 aa24.19■■□□□ 1.46
TRIM28-201ENST00000253024 SLFN14P0C7P3 912 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 GTPBP4Q9BZE4 634 aaKnown RBP24.18■■□□□ 1.46
TRIM28-201ENST00000253024 BRMS1Q9HCU9 246 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 DCP1AQ9NPI6 582 aaPredicted RBP24.18■■□□□ 1.46
TRIM28-201ENST00000253024 DACH1Q9UI36 760 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 XDHP47989 1333 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 ECM29Q5VYK3 1845 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 PNMA6AP0CW24 399 aaPredicted RBP24.18■■□□□ 1.46
TRIM28-201ENST00000253024 TBX2Q13207 712 aaPredicted RBP24.18■■□□□ 1.46
TRIM28-201ENST00000253024 NPY5RQ15761 445 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 GRIK5Q16478 980 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 ZNF569Q5MCW4 686 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 FHOD1Q9Y613 1164 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 FAM205AQ6ZU69 1335 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 TADA3O75528 432 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 TMTC3Q6ZXV5 915 aa24.18■■□□□ 1.46
TRIM28-201ENST00000253024 NSUN4Q96CB9 384 aaKnown RBP24.18■■□□□ 1.46
TRIM28-201ENST00000253024 TFAP4Q01664 338 aa24.17■■□□□ 1.46
TRIM28-201ENST00000253024 NUP88Q99567 741 aaPredicted RBP24.17■■□□□ 1.46
TRIM28-201ENST00000253024 RTL9Q8NET4 1388 aa24.17■■□□□ 1.46
TRIM28-201ENST00000253024 H2AFXP16104 143 aaPredicted RBP24.17■■□□□ 1.46
TRIM28-201ENST00000253024 TRIM10Q9UDY6 481 aa24.17■■□□□ 1.46
TRIM28-201ENST00000253024 PLEKHG2Q9H7P9 1386 aa24.17■■□□□ 1.46
TRIM28-201ENST00000253024 WWC2Q6AWC2 1192 aa24.16■■□□□ 1.46
TRIM28-201ENST00000253024 TYW1BQ6NUM6 668 aa24.16■■□□□ 1.46
TRIM28-201ENST00000253024 HEATR3Q7Z4Q2 680 aa24.16■■□□□ 1.46
TRIM28-201ENST00000253024 AMIGO3Q86WK7 504 aa24.16■■□□□ 1.46
TRIM28-201ENST00000253024 PPP1R3GB7ZBB8 358 aa24.16■■□□□ 1.46
TRIM28-201ENST00000253024 NBPF5PQ86XG9 351 aaPredicted RBP24.16■■□□□ 1.46
TRIM28-201ENST00000253024 DZIP1Q86YF9 867 aaKnown RBP24.16■■□□□ 1.46
TRIM28-201ENST00000253024 PHLPP2Q6ZVD8 1323 aa24.16■■□□□ 1.46
TRIM28-201ENST00000253024 PRPF3O43395 683 aaKnown RBP24.15■■□□□ 1.46
TRIM28-201ENST00000253024 TERF2Q15554 542 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 SLF1Q9BQI6 1058 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 CNTNAP5Q8WYK1 1306 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 USP5P45974 858 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 SPATA1Q5VX52 437 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 STX10O60499 249 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 RHOXF2BP0C7M4 288 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 INF2Q27J81 1249 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 RHOXF2Q9BQY4 288 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 ANKIB1Q9P2G1 1089 aa24.15■■□□□ 1.46
TRIM28-201ENST00000253024 SASH3O75995 380 aa24.14■■□□□ 1.46
TRIM28-201ENST00000253024 SCG2P13521 617 aa24.14■■□□□ 1.46
TRIM28-201ENST00000253024 HIBADHP31937 336 aaKnown RBP24.14■■□□□ 1.46
TRIM28-201ENST00000253024 ZFP91Q96JP5 570 aaPredicted RBP24.14■■□□□ 1.46
TRIM28-201ENST00000253024 SUGCTQ9HAC7 445 aa24.14■■□□□ 1.46
TRIM28-201ENST00000253024 A0A1B0GTH6 734 aa24.14■■□□□ 1.45
TRIM28-201ENST00000253024 GYPCP04921 128 aa24.14■■□□□ 1.45
TRIM28-201ENST00000253024 PLA2G4AP47712 749 aa24.14■■□□□ 1.45
TRIM28-201ENST00000253024 RPS8P62241 208 aaKnown RBP24.14■■□□□ 1.45
TRIM28-201ENST00000253024 KRT31Q15323 416 aa24.14■■□□□ 1.45
TRIM28-201ENST00000253024 KIF4BQ2VIQ3 1234 aa24.14■■□□□ 1.45
TRIM28-201ENST00000253024 UTP14CQ5TAP6 766 aaKnown RBP24.14■■□□□ 1.45
TRIM28-201ENST00000253024 APTXQ7Z2E3 356 aaKnown RBP24.14■■□□□ 1.45
TRIM28-201ENST00000253024 HPS3Q969F9 1004 aa24.14■■□□□ 1.45
TRIM28-201ENST00000253024 KCND1Q9NSA2 647 aa24.14■■□□□ 1.45
TRIM28-201ENST00000253024 CCP110O43303 1012 aa24.13■■□□□ 1.45
TRIM28-201ENST00000253024 CCDC175P0C221 793 aa24.13■■□□□ 1.45
TRIM28-201ENST00000253024 NT5DC1Q5TFE4 455 aa24.13■■□□□ 1.45
TRIM28-201ENST00000253024 ZNF652Q9Y2D9 606 aa24.13■■□□□ 1.45
TRIM28-201ENST00000253024 MYH14Q7Z406 1995 aaKnown RBP24.13■■□□□ 1.45
TRIM28-201ENST00000253024 MAPKAPK5Q8IW41 473 aa24.13■■□□□ 1.45
TRIM28-201ENST00000253024 NELFBQ8WX92 580 aa24.13■■□□□ 1.45
TRIM28-201ENST00000253024 MKNK2Q9HBH9 465 aa24.13■■□□□ 1.45
TRIM28-201ENST00000253024 ADD3Q9UEY8 706 aaKnown RBP24.13■■□□□ 1.45
TRIM28-201ENST00000253024 BMS1Q14692 1282 aaKnown RBP24.12■■□□□ 1.45
TRIM28-201ENST00000253024 KANK3Q6NY19 840 aa24.12■■□□□ 1.45
TRIM28-201ENST00000253024 PARD6BQ9BYG5 372 aa24.12■■□□□ 1.45
TRIM28-201ENST00000253024 TMEM60Q9H2L4 133 aa24.12■■□□□ 1.45
TRIM28-201ENST00000253024 KAT14Q9H8E8 782 aa24.12■■□□□ 1.45
TRIM28-201ENST00000253024 PMS1P54277 932 aaKnown RBP24.12■■□□□ 1.45
TRIM28-201ENST00000253024 ZNF579Q8NAF0 562 aaKnown RBP24.12■■□□□ 1.45
TRIM28-201ENST00000253024 TGFBRAP1Q8WUH2 860 aa24.12■■□□□ 1.45
TRIM28-201ENST00000253024 CHP1Q99653 195 aa24.12■■□□□ 1.45
TRIM28-201ENST00000253024 NOL10Q9BSC4 688 aaKnown RBP24.12■■□□□ 1.45
TRIM28-201ENST00000253024 CRNKL1Q9BZJ0 848 aaKnown RBP24.12■■□□□ 1.45
TRIM28-201ENST00000253024 ENC1O14682 589 aa24.12■■□□□ 1.45
TRIM28-201ENST00000253024 GNPATO15228 680 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms