RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 IFNAR2P48551 515 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 PDE4DQ08499 809 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 NNTQ13423 1086 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 SRLQ86TD4 932 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 CSRNP2Q9H175 543 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 GAS8O95995 478 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 SKIP12755 728 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 TNFAIP3P21580 790 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 PPP1R2P41236 205 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 GOLGA8FQ08AF8 430 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 GOLGA8DPQ0D2H9 430 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 INTS9Q9NV88 658 aaKnown RBP11.53□□□□□ -0.56
VCL-201ENST00000211998 FANCLQ9NW38 375 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 IQSEC3Q9UPP2 1182 aaPredicted RBP11.53□□□□□ -0.56
VCL-201ENST00000211998 GNPTABQ3T906 1256 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 TTC6Q86TZ1 520 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 TTC16Q8NEE8 873 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 PARP2Q9UGN5 583 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 SHANK2Q9UPX8 1470 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 F8W031 263 aaPredicted RBP11.53□□□□□ -0.56
VCL-201ENST00000211998 TCP1P17987 556 aaKnown RBP11.53□□□□□ -0.56
VCL-201ENST00000211998 EPHB4P54760 987 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 ADALQ6DHV7 355 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 CCHCR1Q8TD31 782 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 NELFBQ8WX92 580 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.53□□□□□ -0.56
VCL-201ENST00000211998 NUP153P49790 1475 aaKnown RBP11.53□□□□□ -0.56
VCL-201ENST00000211998 ENC1O14682 589 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 DNAJC8O75937 253 aaPredicted RBP11.53□□□□□ -0.56
VCL-201ENST00000211998 VPS41P49754 854 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 LRRC43Q8N309 656 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 NFATC2IPQ8NCF5 419 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 BCAP29Q9UHQ4 241 aa11.53□□□□□ -0.56
VCL-201ENST00000211998 LDHBP07195 334 aaKnown RBP11.52□□□□□ -0.56
VCL-201ENST00000211998 FBLN1P23142 703 aa11.52□□□□□ -0.56
VCL-201ENST00000211998 DPH5Q9H2P9 285 aa11.52□□□□□ -0.56
VCL-201ENST00000211998 MCM9Q9NXL9 1143 aa11.52□□□□□ -0.56
VCL-201ENST00000211998 RNF8O76064 485 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 ZMYM3Q14202 1370 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 ME3Q16798 604 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 CC2D1AQ6P1N0 951 aaPredicted RBP11.52□□□□□ -0.57
VCL-201ENST00000211998 ARMC9Q7Z3E5 817 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 TBC1D1Q86TI0 1168 aaPredicted RBP11.52□□□□□ -0.57
VCL-201ENST00000211998 CCDC13Q8IYE1 715 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 SYCE1Q8N0S2 351 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 UHMK1Q8TAS1 419 aaKnown RBP11.52□□□□□ -0.57
VCL-201ENST00000211998 HELLSQ9NRZ9 838 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 ZMYM4Q5VZL5 1548 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 ARHGEF12Q9NZN5 1544 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 RNMTO43148 476 aaKnown RBP11.52□□□□□ -0.57
VCL-201ENST00000211998 CYP2C19P33261 490 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 DYNC1I2Q13409 638 aaKnown RBP11.52□□□□□ -0.57
VCL-201ENST00000211998 SLMAPQ14BN4 828 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 CAPRIN2Q6IMN6 1127 aaKnown RBP11.52□□□□□ -0.57
VCL-201ENST00000211998 IP6K1Q92551 441 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 SH2D4AQ9H788 454 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 DENND2AQ9ULE3 1009 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 KRIT1O00522 736 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 KCNK3O14649 394 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 CD2BP2O95400 341 aaKnown RBP11.52□□□□□ -0.57
VCL-201ENST00000211998 POLD1P28340 1107 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 C2CD5Q86YS7 1000 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 LRRC59Q96AG4 307 aaKnown RBP11.52□□□□□ -0.57
VCL-201ENST00000211998 C8orf37Q96NL8 207 aa11.52□□□□□ -0.57
VCL-201ENST00000211998 PFKFB1P16118 471 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 MAGEB6Q8N7X4 407 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 TCOF1Q13428 1488 aaKnown RBP11.51□□□□□ -0.57
VCL-201ENST00000211998 CCDC169A6NNP5 214 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 FAM13AO94988 1023 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 GCP02774 474 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 SERPINB6P35237 376 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 CCDC92Q53HC0 331 aaPredicted RBP11.51□□□□□ -0.57
VCL-201ENST00000211998 HS2ST1Q7LGA3 356 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 JDP2Q8WYK2 163 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 RBM17Q96I25 401 aaKnown RBP11.51□□□□□ -0.57
VCL-201ENST00000211998 SSX2IPQ9Y2D8 614 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 YTHDC2Q9H6S0 1430 aaKnown RBP11.51□□□□□ -0.57
VCL-201ENST00000211998 EVI5O60447 810 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 MX2P20592 715 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 PDE6BP35913 854 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 KLHL30Q0D2K2 578 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 PARP10Q53GL7 1025 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 RRAGAQ7L523 313 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 TBC1D8O95759 1140 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 TFCP2Q12800 502 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 KSR1Q8IVT5 923 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 HOMEZQ8IX15 550 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 MSANTD4Q8NCY6 345 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 NSFL1CQ9UNZ2 370 aaKnown RBP11.51□□□□□ -0.57
VCL-201ENST00000211998 TACC3Q9Y6A5 838 aa11.51□□□□□ -0.57
VCL-201ENST00000211998 BUB1O43683 1085 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 CTNND1O60716 968 aaKnown RBP11.5□□□□□ -0.57
VCL-201ENST00000211998 FLOT1O75955 427 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 HOXB7P09629 217 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 HOXC9P31274 260 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 TNNI2P48788 182 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 SV2BQ7L1I2 683 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 CENPKQ9BS16 269 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 MAP3K7O43318 606 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 NR1D1P20393 614 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms