RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 Q3C1V9 767 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 TMTC4Q5T4D3 741 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 MIS18BP1Q6P0N0 1132 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 BRAPQ7Z569 592 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 PNMA8AQ86V59 439 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 LINS1Q8NG48 757 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 HVCN1Q96D96 273 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 UTP11Q9Y3A2 253 aaKnown RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 FARP1Q9Y4F1 1045 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ALAS1P13196 640 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 SETDB1Q15047 1291 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ACBD5Q5T8D3 534 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 SNX25Q9H3E2 840 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 HELLSQ9NRZ9 838 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ZBBXA8MT70 800 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 RNMTO43148 476 aaKnown RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 MBD4O95243 580 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 HCLS1P14317 486 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 UBE2HP62256 183 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 UBXN2AP68543 259 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 IGBP1P78318 339 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 PPP2R5AQ15172 486 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 CCDC93Q567U6 631 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 RUFY4Q6ZNE9 571 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 TGFBRAP1Q8WUH2 860 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 DONSONQ9NYP3 566 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 SEPT10Q9P0V9 454 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ZFYVE9O95405 1425 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 CCND2P30279 289 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 PPP2R5BQ15173 497 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 RHPN1Q8TCX5 695 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 SEC62Q99442 399 aaKnown RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 PRDM5Q9NQX1 630 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 KDM5AP29375 1690 aaKnown RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ATP10AO60312 1499 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ACTN4O43707 911 aaKnown RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 NNMTP40261 264 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 TNNC1P63316 161 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 SEPT6Q14141 434 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ZNF365Q70YC5 407 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 EDEM3Q9BZQ6 932 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 NT5C3AQ9H0P0 336 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ST7Q9NRC1 585 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 ARPP21Q9UBL0 812 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 SLC4A7Q9Y6M7 1214 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 I3L4J1 428 aa6.77□□□□□ -1.32
SCN1A-217ENST00000637988 PTGS1P23219 599 aa6.77□□□□□ -1.32
SCN1A-217ENST00000637988 RECQLP46063 649 aaPredicted RBP6.77□□□□□ -1.32
SCN1A-217ENST00000637988 KRT25Q7Z3Z0 450 aa6.77□□□□□ -1.32
SCN1A-217ENST00000637988 SDCCAG8Q86SQ7 713 aaPredicted RBP6.77□□□□□ -1.32
SCN1A-217ENST00000637988 CDHR1Q96JP9 859 aa6.77□□□□□ -1.32
SCN1A-217ENST00000637988 ASXL1Q8IXJ9 1541 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 SNW1Q13573 536 aaKnown RBP6.77□□□□□ -1.33
SCN1A-217ENST00000637988 RINT1Q6NUQ1 792 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 NLRP7Q8WX94 980 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 RSAD2Q8WXG1 361 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 LPIN2Q92539 896 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 ANKRD36BP1Q96IX9 119 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 MMTAG2Q9BU76 263 aaKnown RBP6.77□□□□□ -1.33
SCN1A-217ENST00000637988 VCXQ9H320 206 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 NKIRAS1Q9NYS0 192 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 SBNO2Q9Y2G9 1366 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 DEXIO95424 95 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 ARMCX5Q6P1M9 558 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 TMX1Q9H3N1 280 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 SUGCTQ9HAC7 445 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 BAG5Q9UL15 447 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 PRKCQQ04759 706 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 SLFN5Q08AF3 891 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 MAIP1Q8WWC4 291 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 NACC1Q96RE7 527 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 BLMP54132 1417 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-217ENST00000637988 TPH2Q8IWU9 490 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 TMEM87BQ96K49 555 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 KCNK9Q9NPC2 374 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 PIM2Q9P1W9 311 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 ADGBQ8N7X0 1667 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 ERVV-2B6SEH9 535 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 GNA14O95837 355 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 GSTA1P08263 222 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 GSTA2P09210 222 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 BPIFB4P59827 614 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 ASIC2Q16515 512 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 THEM5Q8N1Q8 247 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 SELENOSQ9BQE4 189 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 EXOC3O60645 756 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 TMEM191BP0C7N4 346 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 TAF11Q15544 211 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 IFT122Q9HBG6 1241 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 PARP2Q9UGN5 583 aa6.77□□□□□ -1.33
SCN1A-217ENST00000637988 RTL1A6NKG5 1358 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 VWA3AA6NCI4 1184 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 A6NJR5 290 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 N4BP1O75113 896 aaKnown RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 SRPK1Q96SB4 655 aaKnown RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 OLA1Q9NTK5 396 aaKnown RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 FEZ2Q9UHY8 353 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-217ENST00000637988 PCDHB13Q9Y5F0 798 aa6.76□□□□□ -1.33
SCN1A-217ENST00000637988 USH1CQ9Y6N9 552 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms