RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 RNF41Q9H4P4 317 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 CNNM1Q9NRU3 951 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 CWC15Q9P013 229 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ANGEL1Q9UNK9 670 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 CNTNAP4Q9C0A0 1308 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 A0A1B0GVL5 298 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ANKRD18BA2A2Z9 1011 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ARHGAP6O43182 974 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 STARD3NLO95772 234 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 POLR3DP05423 398 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 CASQ1P31415 396 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ATP2B3Q16720 1220 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 DCAF8Q5TAQ9 597 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 KRT23Q9C075 422 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 GBP3Q9H0R5 595 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 NCOA5Q9HCD5 579 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 DNAI1Q9UI46 699 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 SLC12A7Q9Y666 1083 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 TUBBP07437 444 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 EVCP57679 992 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 SLC39A14Q15043 492 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 CT47A1Q5JQC4 288 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 NYAP1Q6ZVC0 841 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 DHX40Q8IX18 779 aaKnown RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 GPC2Q8N158 579 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 PDILTQ8N807 584 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 MLKLQ8NB16 471 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 ENGASEQ8NFI3 743 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 ERCC4Q92889 916 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 SEC62Q99442 399 aaKnown RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 XPO4Q9C0E2 1151 aaKnown RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 ZHX1Q9UKY1 873 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 ZNF215Q9UL58 517 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 ZNF330Q9Y3S2 320 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 MORC2Q9Y6X9 1032 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 RBBP6Q7Z6E9 1792 aaKnown RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 FAM177BA6PVY3 158 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 RPS6KA4O75676 772 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 EIF3JO75822 258 aaKnown RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 URI1O94763 535 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 PFKFB1P16118 471 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 GNAT2P19087 354 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 NDUFA8P51970 172 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 ETF1P62495 437 aaKnown RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 MAP3K12Q12852 859 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 TSR1Q2NL82 804 aaKnown RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC144BQ3MJ40 725 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 COL23A1Q86Y22 540 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC144CPQ8IYA2 1237 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 KRI1Q8N9T8 703 aaKnown RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 TRIML1Q8N9V2 468 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 CTAGE1Q96RT6 745 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 GOLPH3LQ9H4A5 285 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 TOMM22Q9NS69 142 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 BIN1O00499 593 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 ZSCAN20P17040 1043 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 KIF23Q02241 960 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 PPP2R5BQ15173 497 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 TMEM67Q5HYA8 995 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 SYT10Q6XYQ8 523 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 ELOA2Q8IYF1 753 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 GOLGA6L1Q8N7Z2 621 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 XAGE2Q96GT9 111 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 PPP1R13BQ96KQ4 1090 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 NAPBQ9H115 298 aa4.54□□□□□ -1.68
SCN1A-214ENST00000637038 V9GYY5 206 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-214ENST00000637038 GPAA1O43292 621 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 KIF5CO60282 957 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 HAND2P61296 217 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 TIMM10P62072 90 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 CCZ1BP86790 482 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 CCZ1P86791 482 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 ELF2Q15723 593 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 RILPL1Q5EBL4 403 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 NIM1KQ8IY84 436 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 TXLNBQ8N3L3 684 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 NBPF3Q9H094 633 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 ZBTB3Q9H5J0 574 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 ADARB2Q9NS39 739 aaKnown RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 TACC3Q9Y6A5 838 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 EFCAB8A8MWE9 144 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 IDH1O75874 414 aaKnown RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 PCCAP05165 728 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 SLC5A1P13866 664 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 FOXO4P98177 505 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 SPAG1Q07617 926 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 UBE3CQ15386 1083 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 SLC4A8Q2Y0W8 1093 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 ARHGAP29Q52LW3 1261 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 ATG9AQ7Z3C6 839 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC47Q96A33 483 aaKnown RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 DCPSQ96C86 337 aaKnown RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 NAA15Q9BXJ9 866 aaKnown RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 TAF1DQ9H5J8 278 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 KCNH3Q9ULD8 1083 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 MAP3K15Q6ZN16 1313 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 STK36Q9NRP7 1315 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms