RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ZNF287Q9HBT7 754 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 ZMYM6O95789 1325 aa21.51■■□□□ 1.03
CLN3-239ENST00000628023 USP17L5A8MUK1 530 aa21.5■■□□□ 1.03
CLN3-239ENST00000628023 FGAP02671 866 aa21.5■■□□□ 1.03
CLN3-239ENST00000628023 RAB3GAP1Q15042 981 aa21.5■■□□□ 1.03
CLN3-239ENST00000628023 SHROOM1Q2M3G4 852 aaPredicted RBP21.5■■□□□ 1.03
CLN3-239ENST00000628023 DSCC1Q9BVC3 393 aa21.5■■□□□ 1.03
CLN3-239ENST00000628023 IL25Q9H293 177 aa21.5■■□□□ 1.03
CLN3-239ENST00000628023 AS3MTQ9HBK9 375 aa21.5■■□□□ 1.03
CLN3-239ENST00000628023 KCNH4Q9UQ05 1017 aa21.5■■□□□ 1.03
CLN3-239ENST00000628023 MYH8P13535 1937 aa21.5■■□□□ 1.03
CLN3-239ENST00000628023 TRIM75PA6NK02 468 aa21.49■■□□□ 1.03
CLN3-239ENST00000628023 SGSM2O43147 1006 aa21.49■■□□□ 1.03
CLN3-239ENST00000628023 LACTBP83111 547 aaPredicted RBP21.49■■□□□ 1.03
CLN3-239ENST00000628023 PDE4BQ07343 736 aa21.49■■□□□ 1.03
CLN3-239ENST00000628023 TBC1D2Q9BYX2 928 aa21.49■■□□□ 1.03
CLN3-239ENST00000628023 KIAA0100Q14667 2235 aaKnown RBP21.48■■□□□ 1.03
CLN3-239ENST00000628023 POTEFA5A3E0 1075 aa21.48■■□□□ 1.03
CLN3-239ENST00000628023 PDHXO00330 501 aa21.48■■□□□ 1.03
CLN3-239ENST00000628023 CXCL11O14625 94 aa21.48■■□□□ 1.03
CLN3-239ENST00000628023 PRMT2P55345 433 aa21.48■■□□□ 1.03
CLN3-239ENST00000628023 JAG1P78504 1218 aa21.48■■□□□ 1.03
CLN3-239ENST00000628023 KIAA1211Q6ZU35 1233 aa21.48■■□□□ 1.03
CLN3-239ENST00000628023 CCDC17Q96LX7 622 aa21.48■■□□□ 1.03
CLN3-239ENST00000628023 PTCH2Q9Y6C5 1203 aa21.48■■□□□ 1.03
CLN3-239ENST00000628023 HAND2P61296 217 aa21.47■■□□□ 1.03
CLN3-239ENST00000628023 CAP1Q01518 475 aa21.47■■□□□ 1.03
CLN3-239ENST00000628023 CTDSPL2Q05D32 466 aa21.47■■□□□ 1.03
CLN3-239ENST00000628023 ZNF444Q8N0Y2 327 aaPredicted RBP21.47■■□□□ 1.03
CLN3-239ENST00000628023 ZNF280CQ8ND82 737 aa21.47■■□□□ 1.03
CLN3-239ENST00000628023 ESYT1Q9BSJ8 1104 aa21.47■■□□□ 1.03
CLN3-239ENST00000628023 CTNNA3Q9UI47 895 aa21.47■■□□□ 1.03
CLN3-239ENST00000628023 AFG3L2Q9Y4W6 797 aa21.47■■□□□ 1.03
CLN3-239ENST00000628023 PRDM1O75626 825 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 AKR1B1P15121 316 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 HOXD10P28358 340 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 SPP2Q13103 211 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 C17orf99Q6UX52 265 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 TMEM179Q6ZVK1 233 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 FASTKD5Q7L8L6 764 aaKnown RBP21.46■■□□□ 1.03
CLN3-239ENST00000628023 ZNF333Q96JL9 665 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 FEZ1Q99689 392 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 TOMM22Q9NS69 142 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 HTTP42858 3142 aa21.46■■□□□ 1.03
CLN3-239ENST00000628023 ZNF213O14771 459 aa21.45■■□□□ 1.02
CLN3-239ENST00000628023 RASA1P20936 1047 aa21.45■■□□□ 1.02
CLN3-239ENST00000628023 SEPT2Q15019 361 aa21.45■■□□□ 1.02
CLN3-239ENST00000628023 IMMTQ16891 758 aaKnown RBP21.45■■□□□ 1.02
CLN3-239ENST00000628023 PARK7Q99497 189 aaKnown RBP21.45■■□□□ 1.02
CLN3-239ENST00000628023 CPA4Q9UI42 421 aa21.45■■□□□ 1.02
CLN3-239ENST00000628023 ANAPC4Q9UJX5 808 aa21.45■■□□□ 1.02
CLN3-239ENST00000628023 GADL1Q6ZQY3 521 aa21.44■■□□□ 1.02
CLN3-239ENST00000628023 ARHGAP39Q9C0H5 1083 aa21.44■■□□□ 1.02
CLN3-239ENST00000628023 PHIPQ8WWQ0 1821 aa21.43■■□□□ 1.02
CLN3-239ENST00000628023 A0A0G2JLL6 359 aaPredicted RBP21.43■■□□□ 1.02
CLN3-239ENST00000628023 FMNL1O95466 1100 aaPredicted RBP21.43■■□□□ 1.02
CLN3-239ENST00000628023 EN2P19622 333 aaPredicted RBP21.43■■□□□ 1.02
CLN3-239ENST00000628023 PSMC4P43686 418 aa21.43■■□□□ 1.02
CLN3-239ENST00000628023 ICA1Q05084 483 aa21.43■■□□□ 1.02
CLN3-239ENST00000628023 MTMR2Q13614 643 aa21.43■■□□□ 1.02
CLN3-239ENST00000628023 PRRT2Q7Z6L0 340 aaPredicted RBP21.43■■□□□ 1.02
CLN3-239ENST00000628023 WDR18Q9BV38 432 aa21.43■■□□□ 1.02
CLN3-239ENST00000628023 ANO2Q9NQ90 1003 aa21.43■■□□□ 1.02
CLN3-239ENST00000628023 U3KPZ7 1027 aaPredicted RBP21.43■■□□□ 1.02
CLN3-239ENST00000628023 TSPY3P0CV98 308 aa21.42■■□□□ 1.02
CLN3-239ENST00000628023 TSPY8P0CW00 308 aa21.42■■□□□ 1.02
CLN3-239ENST00000628023 ATP2B2Q01814 1243 aa21.42■■□□□ 1.02
CLN3-239ENST00000628023 PTH1RQ03431 593 aa21.42■■□□□ 1.02
CLN3-239ENST00000628023 RRP12Q5JTH9 1297 aaKnown RBP21.42■■□□□ 1.02
CLN3-239ENST00000628023 RNF41Q9H4P4 317 aaPredicted RBP21.42■■□□□ 1.02
CLN3-239ENST00000628023 TMOD4Q9NZQ9 345 aa21.42■■□□□ 1.02
CLN3-239ENST00000628023 LAMA4Q16363 1823 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 RBBP6Q7Z6E9 1792 aaKnown RBP21.41■■□□□ 1.02
CLN3-239ENST00000628023 USP17L10C9JJH3 530 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 RANBP6O60518 1105 aaKnown RBP21.41■■□□□ 1.02
CLN3-239ENST00000628023 GUCY1A2P33402 732 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 HMGCS2P54868 508 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 MOGSQ13724 837 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 AKNAD1Q5T1N1 836 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 MFSD6Q6ZSS7 791 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 CLEC10AQ8IUN9 316 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 TBC1D10CQ8IV04 446 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 ARHGEF10LQ9HCE6 1279 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 SRRDQ9UH36 339 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.41■■□□□ 1.02
CLN3-239ENST00000628023 GTF3C3Q9Y5Q9 886 aa21.41■■□□□ 1.02
CLN3-239ENST00000628023 TSPY2A6NKD2 308 aa21.4■■□□□ 1.02
CLN3-239ENST00000628023 ECM2O94769 699 aaPredicted RBP21.4■■□□□ 1.02
CLN3-239ENST00000628023 PCP11498 1178 aaKnown RBP21.4■■□□□ 1.02
CLN3-239ENST00000628023 BACE1P56817 501 aa21.4■■□□□ 1.02
CLN3-239ENST00000628023 ZYXQ15942 572 aaKnown RBP21.4■■□□□ 1.02
CLN3-239ENST00000628023 FAM47AQ5JRC9 791 aa21.4■■□□□ 1.02
CLN3-239ENST00000628023 RAET1EQ8TD07 263 aa21.4■■□□□ 1.02
CLN3-239ENST00000628023 SH3TC2Q8TF17 1288 aa21.4■■□□□ 1.02
CLN3-239ENST00000628023 STAG1Q8WVM7 1258 aa21.4■■□□□ 1.02
CLN3-239ENST00000628023 KANSL2Q9H9L4 492 aa21.4■■□□□ 1.02
CLN3-239ENST00000628023 INCENPQ9NQS7 918 aa21.4■■□□□ 1.02
CLN3-239ENST00000628023 CENPFP49454 3210 aa21.39■■□□□ 1.02
CLN3-239ENST00000628023 C19orf81C9J6K1 198 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 ORC4O43929 436 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms