RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 KIAA1683Q9H0B3 1180 aa17.8■□□□□ 0.44
LINC00643-205ENST00000623219 ARPP21Q9UBL0 812 aaPredicted RBP17.8■□□□□ 0.44
LINC00643-205ENST00000623219 ROBO3Q96MS0 1386 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 GUCY1A2P33402 732 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 PRKCZQ05513 592 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 ANKRD45Q5TZF3 282 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 C12orf60Q5U649 245 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 SLC44A5Q8NCS7 719 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 GTF3C2Q8WUA4 911 aaPredicted RBP17.79■□□□□ 0.44
LINC00643-205ENST00000623219 OSBP2Q969R2 916 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 STRBPQ96SI9 672 aaKnown RBP17.79■□□□□ 0.44
LINC00643-205ENST00000623219 EMILIN3Q9NT22 766 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 PLXNA1Q9UIW2 1896 aa17.79■□□□□ 0.44
LINC00643-205ENST00000623219 USP17L12C9JPN9 530 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 USP17L21D6R901 530 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 MPHOSPH10O00566 681 aaKnown RBP17.78■□□□□ 0.44
LINC00643-205ENST00000623219 TNPO2O14787 897 aaKnown RBP17.78■□□□□ 0.44
LINC00643-205ENST00000623219 SEPT2Q15019 361 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 ZYXQ15942 572 aaKnown RBP17.78■□□□□ 0.44
LINC00643-205ENST00000623219 GIMAP6Q6P9H5 292 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 TMEM179Q6ZVK1 233 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 C16orf86Q6ZW13 317 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 SH3TC2Q8TF17 1288 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 DYNLL2Q96FJ2 89 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 FSD1Q9BTV5 496 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 MORF4L1Q9UBU8 362 aa17.78■□□□□ 0.44
LINC00643-205ENST00000623219 POTEFA5A3E0 1075 aa17.77■□□□□ 0.44
LINC00643-205ENST00000623219 GPAA1O43292 621 aa17.77■□□□□ 0.44
LINC00643-205ENST00000623219 GNAT2P19087 354 aa17.77■□□□□ 0.44
LINC00643-205ENST00000623219 VCAM1P19320 739 aa17.77■□□□□ 0.44
LINC00643-205ENST00000623219 GRK4P32298 578 aa17.77■□□□□ 0.44
LINC00643-205ENST00000623219 HERVK_113P62684 666 aa17.77■□□□□ 0.44
LINC00643-205ENST00000623219 CTR9Q6PD62 1173 aa17.77■□□□□ 0.44
LINC00643-205ENST00000623219 TMEM106CQ9BVX2 250 aa17.77■□□□□ 0.44
LINC00643-205ENST00000623219 CYP2D7A0A087X1C5 515 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 M0R2C6 588 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 IRF5Q13568 498 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 SBK1Q52WX2 424 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 SLAIN1Q8ND83 568 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 ACER1Q8TDN7 264 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 COA7Q96BR5 231 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 CCDC17Q96LX7 622 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 RWDD1Q9H446 243 aaPredicted RBP17.76■□□□□ 0.43
LINC00643-205ENST00000623219 STAP2Q9UGK3 403 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 GABRQQ9UN88 632 aa17.76■□□□□ 0.43
LINC00643-205ENST00000623219 GSG1L2A8MUP6 293 aa17.75■□□□□ 0.43
LINC00643-205ENST00000623219 CDK8P49336 464 aa17.75■□□□□ 0.43
LINC00643-205ENST00000623219 SMC5Q8IY18 1101 aa17.75■□□□□ 0.43
LINC00643-205ENST00000623219 EXOC6Q8TAG9 804 aa17.75■□□□□ 0.43
LINC00643-205ENST00000623219 P2RX7Q99572 595 aaKnown RBP17.75■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L15C9J2P7 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L13C9JLJ4 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L11C9JVI0 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L18D6R9N7 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L22D6RA61 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L17D6RBQ6 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L19D6RCP7 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L20D6RJB6 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 AKR1B1P15121 316 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 FLT3LGP49771 235 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 PDE1AP54750 535 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 ICA1Q05084 483 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 USP17L24Q0WX57 530 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 SH2D4AQ9H788 454 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 ARHGEF10LQ9HCE6 1279 aa17.74■□□□□ 0.43
LINC00643-205ENST00000623219 EPB41L4AQ9HCS5 686 aaPredicted RBP17.74■□□□□ 0.43
LINC00643-205ENST00000623219 A0A1W2PRG0 241 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 SMIM22K7EJ46 135 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 TDO2P48775 406 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 ERVK-9P63128 1117 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 ERVK-24P63145 666 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 ZMYM1Q5SVZ6 1142 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 CATSPERGQ6ZRH7 1159 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 GPRC5AQ8NFJ5 357 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 PXYLP1Q8TE99 480 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 TXNRD2Q9NNW7 524 aa17.73■□□□□ 0.43
LINC00643-205ENST00000623219 ALPK3Q96L96 1907 aa17.72■□□□□ 0.43
LINC00643-205ENST00000623219 ADCY3O60266 1144 aa17.72■□□□□ 0.43
LINC00643-205ENST00000623219 UBXN2AP68543 259 aa17.72■□□□□ 0.43
LINC00643-205ENST00000623219 LBX2Q6XYB7 198 aa17.72■□□□□ 0.43
LINC00643-205ENST00000623219 LPAR1Q92633 364 aa17.72■□□□□ 0.43
LINC00643-205ENST00000623219 EVI5LQ96CN4 794 aa17.72■□□□□ 0.43
LINC00643-205ENST00000623219 LNPKQ9C0E8 428 aa17.72■□□□□ 0.43
LINC00643-205ENST00000623219 RPAP3Q9H6T3 665 aaPredicted RBP17.72■□□□□ 0.43
LINC00643-205ENST00000623219 SUPT16HQ9Y5B9 1047 aaKnown RBP17.72■□□□□ 0.43
LINC00643-205ENST00000623219 PATL2C9JE40 543 aaKnown RBP17.71■□□□□ 0.43
LINC00643-205ENST00000623219 MYCP01106 439 aaPredicted RBP17.71■□□□□ 0.43
LINC00643-205ENST00000623219 CLEC10AQ8IUN9 316 aa17.71■□□□□ 0.43
LINC00643-205ENST00000623219 SEC62Q99442 399 aaKnown RBP17.71■□□□□ 0.43
LINC00643-205ENST00000623219 PAGR1Q9BTK6 254 aa17.71■□□□□ 0.43
LINC00643-205ENST00000623219 NACAP1Q9BZK3 213 aa17.71■□□□□ 0.43
LINC00643-205ENST00000623219 RBPJLQ9UBG7 517 aa17.71■□□□□ 0.43
LINC00643-205ENST00000623219 TMX2Q9Y320 296 aa17.71■□□□□ 0.43
LINC00643-205ENST00000623219 RABGAP1Q9Y3P9 1069 aa17.71■□□□□ 0.43
LINC00643-205ENST00000623219 MINDY4BA8MYZ0 360 aa17.7■□□□□ 0.42
LINC00643-205ENST00000623219 APPP05067 770 aa17.7■□□□□ 0.42
LINC00643-205ENST00000623219 EN2P19622 333 aaPredicted RBP17.7■□□□□ 0.42
LINC00643-205ENST00000623219 MAPK4P31152 587 aa17.7■□□□□ 0.42
LINC00643-205ENST00000623219 MTFR1Q15390 333 aa17.7■□□□□ 0.42
LINC00643-205ENST00000623219 TICAM2Q86XR7 235 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms