RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 CXCL11O14625 94 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 PDE4BQ07343 736 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 SPP2Q13103 211 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 IMMTQ16891 758 aaKnown RBP12.54□□□□□ -0.4
LIG1-210ENST00000596332 POTEEQ6S8J3 1075 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 MFSD6Q6ZSS7 791 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 KIAA1211Q6ZU35 1233 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 TMEM179Q6ZVK1 233 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 PRRT2Q7Z6L0 340 aaPredicted RBP12.54□□□□□ -0.4
LIG1-210ENST00000596332 AMOTL1Q8IY63 956 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 MB21D2Q8IYB1 491 aaPredicted RBP12.54□□□□□ -0.4
LIG1-210ENST00000596332 JMYQ8N9B5 988 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 ZNF280CQ8ND82 737 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 MKL1Q969V6 931 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 IL17RAQ96F46 866 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 CEP95Q96GE4 821 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 MKNK2Q9HBH9 465 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 EMILIN3Q9NT22 766 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 MTMR4Q9NYA4 1195 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.54□□□□□ -0.4
LIG1-210ENST00000596332 B4E1Z4 1266 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 IGF2BP3O00425 579 aaKnown RBP eCLIP12.53□□□□□ -0.4
LIG1-210ENST00000596332 PCP11498 1178 aaKnown RBP12.53□□□□□ -0.4
LIG1-210ENST00000596332 EEF2P13639 858 aaKnown RBP12.53□□□□□ -0.4
LIG1-210ENST00000596332 MAP2K2P36507 400 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 BACE1P56817 501 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 NOGQ13253 232 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 CASC1Q6TDU7 716 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 ZNF444Q8N0Y2 327 aaPredicted RBP12.53□□□□□ -0.4
LIG1-210ENST00000596332 TRIM34Q9BYJ4 488 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 PICK1Q9NRD5 415 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 NYAP2Q9P242 653 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 TMX2Q9Y320 296 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 SNX14Q9Y5W7 946 aa12.53□□□□□ -0.4
LIG1-210ENST00000596332 KDM4AO75164 1064 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 EXOSC10Q01780 885 aaKnown RBP12.52□□□□□ -0.41
LIG1-210ENST00000596332 RAB3GAP1Q15042 981 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 SEC23AQ15436 765 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 FAM43AQ8N2R8 423 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 ANKS1AQ92625 1134 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 C12orf42Q96LP6 360 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 KIAA1683Q9H0B3 1180 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 R3HDMLQ9H3Y0 253 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 KANSL2Q9H9L4 492 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 SENP2Q9HC62 589 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 CABP5Q9NP86 173 aa12.52□□□□□ -0.41
LIG1-210ENST00000596332 GPHNQ9NQX3 736 aaPredicted RBP12.52□□□□□ -0.41
LIG1-210ENST00000596332 TRIM75PA6NK02 468 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 BTBD19C9JJ37 291 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 USP17L10C9JJH3 530 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 MPHOSPH10O00566 681 aaKnown RBP12.51□□□□□ -0.41
LIG1-210ENST00000596332 RANBP6O60518 1105 aaKnown RBP12.51□□□□□ -0.41
LIG1-210ENST00000596332 REC8O95072 547 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 SLC3A2P08195 630 aaKnown RBP12.51□□□□□ -0.41
LIG1-210ENST00000596332 GTF2A2P52657 109 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 GRM1Q13255 1194 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 MTMR2Q13614 643 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 TREML2Q5T2D2 321 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 IGDCC4Q8TDY8 1250 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 KIF2CQ99661 725 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 ZKSCAN3Q9BRR0 538 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 TBC1D2Q9BYX2 928 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 RNF41Q9H4P4 317 aaPredicted RBP12.51□□□□□ -0.41
LIG1-210ENST00000596332 ZNF287Q9HBT7 754 aa12.51□□□□□ -0.41
LIG1-210ENST00000596332 PTPRFP10586 1907 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 CCL15-CCL14A0A0B4J2E2 113 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 MANSC4A6NHS7 340 aaPredicted RBP12.5□□□□□ -0.41
LIG1-210ENST00000596332 TSPY3P0CV98 308 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 TSPY8P0CW00 308 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 HMGCS2P54868 508 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 ICA1Q05084 483 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 SNAPC2Q13487 334 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 CCL15Q16663 113 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 RRP12Q5JTH9 1297 aaKnown RBP12.5□□□□□ -0.41
LIG1-210ENST00000596332 RASGRP2Q7LDG7 609 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 CHST3Q7LGC8 479 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 IFNL1Q8IU54 200 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 BACH2Q9BYV9 841 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 WBP1LQ9NX94 342 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 CLIP2Q9UDT6 1046 aa12.5□□□□□ -0.41
LIG1-210ENST00000596332 TSPY2A6NKD2 308 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 C19orf81C9J6K1 198 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 CETPP11597 493 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 CPA1P15085 419 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 INHBEP58166 350 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 PAXIP1Q6ZW49 1069 aaPredicted RBP12.49□□□□□ -0.41
LIG1-210ENST00000596332 ENAHQ8N8S7 591 aaPredicted RBP12.49□□□□□ -0.41
LIG1-210ENST00000596332 ESR2Q92731 530 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 TTC14Q96N46 770 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 ZSCAN10Q96SZ4 725 aaPredicted RBP12.49□□□□□ -0.41
LIG1-210ENST00000596332 TMEM47Q9BQJ4 181 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 KRT23Q9C075 422 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 CNNM2Q9H8M5 875 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 AS3MTQ9HBK9 375 aa12.49□□□□□ -0.41
LIG1-210ENST00000596332 ADGRA2Q96PE1 1338 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 F5H6K3 240 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 TTLL1O95922 423 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 HOXA7P31268 230 aaPredicted RBP12.48□□□□□ -0.41
LIG1-210ENST00000596332 NT5C2P49902 561 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 KLRC3Q07444 240 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms