RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 POTEFA5A3E0 1075 aa18.32■□□□□ 0.52
TRIM28-203ENST00000593582 HERVK_113P62684 666 aa18.32■□□□□ 0.52
TRIM28-203ENST00000593582 GIMAP6Q6P9H5 292 aa18.32■□□□□ 0.52
TRIM28-203ENST00000593582 CTR9Q6PD62 1173 aa18.32■□□□□ 0.52
TRIM28-203ENST00000593582 TMEM179Q6ZVK1 233 aa18.32■□□□□ 0.52
TRIM28-203ENST00000593582 ACER1Q8TDN7 264 aa18.32■□□□□ 0.52
TRIM28-203ENST00000593582 COA7Q96BR5 231 aa18.32■□□□□ 0.52
TRIM28-203ENST00000593582 P2RX7Q99572 595 aaKnown RBP18.32■□□□□ 0.52
TRIM28-203ENST00000593582 FSD1Q9BTV5 496 aa18.32■□□□□ 0.52
TRIM28-203ENST00000593582 ARPP21Q9UBL0 812 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-203ENST00000593582 GPAA1O43292 621 aa18.31■□□□□ 0.52
TRIM28-203ENST00000593582 MYCP01106 439 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-203ENST00000593582 GNAT2P19087 354 aa18.31■□□□□ 0.52
TRIM28-203ENST00000593582 GRK4P32298 578 aa18.31■□□□□ 0.52
TRIM28-203ENST00000593582 GUCY1A2P33402 732 aa18.31■□□□□ 0.52
TRIM28-203ENST00000593582 CDK8P49336 464 aa18.31■□□□□ 0.52
TRIM28-203ENST00000593582 C16orf86Q6ZW13 317 aa18.31■□□□□ 0.52
TRIM28-203ENST00000593582 GTF3C2Q8WUA4 911 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-203ENST00000593582 CCDC17Q96LX7 622 aa18.31■□□□□ 0.52
TRIM28-203ENST00000593582 SALL3Q9BXA9 1300 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 GSG1L2A8MUP6 293 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L15C9J2P7 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L13C9JLJ4 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L11C9JVI0 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L18D6R9N7 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L22D6RA61 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L17D6RBQ6 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L19D6RCP7 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L20D6RJB6 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 FLT3LGP49771 235 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 USP17L24Q0WX57 530 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 SLAIN1Q8ND83 568 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 EXOC6Q8TAG9 804 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 MORF4L1Q9UBU8 362 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 BIN2Q9UBW5 565 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-203ENST00000593582 STAP2Q9UGK3 403 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 GABRQQ9UN88 632 aa18.3■□□□□ 0.52
TRIM28-203ENST00000593582 M0R2C6 588 aa18.29■□□□□ 0.52
TRIM28-203ENST00000593582 APPP05067 770 aa18.29■□□□□ 0.52
TRIM28-203ENST00000593582 VCAM1P19320 739 aa18.29■□□□□ 0.52
TRIM28-203ENST00000593582 SBK1Q52WX2 424 aa18.29■□□□□ 0.52
TRIM28-203ENST00000593582 GPRC5AQ8NFJ5 357 aa18.29■□□□□ 0.52
TRIM28-203ENST00000593582 SUPT16HQ9Y5B9 1047 aaKnown RBP18.29■□□□□ 0.52
TRIM28-203ENST00000593582 SMIM22K7EJ46 135 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 AKR1B1P15121 316 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 TDO2P48775 406 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 PDE1AP54750 535 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 ICA1Q05084 483 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 IRF5Q13568 498 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 SMC5Q8IY18 1101 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 SH2D4AQ9H788 454 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 ARHGEF10LQ9HCE6 1279 aa18.28■□□□□ 0.52
TRIM28-203ENST00000593582 A0A1W2PRG0 241 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 MINDY4BA8MYZ0 360 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 PATL2C9JE40 543 aaKnown RBP18.27■□□□□ 0.52
TRIM28-203ENST00000593582 ADCY3O60266 1144 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 EN2P19622 333 aaPredicted RBP18.27■□□□□ 0.52
TRIM28-203ENST00000593582 UBXN2AP68543 259 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 ZMYM1Q5SVZ6 1142 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 B4GALNT3Q6L9W6 998 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 CATSPERGQ6ZRH7 1159 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 CCAR1Q8IX12 1150 aaKnown RBP18.27■□□□□ 0.52
TRIM28-203ENST00000593582 PXYLP1Q8TE99 480 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 EVI5LQ96CN4 794 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 PAGR1Q9BTK6 254 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 NACAP1Q9BZK3 213 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 LNPKQ9C0E8 428 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 RPAP3Q9H6T3 665 aaPredicted RBP18.27■□□□□ 0.52
TRIM28-203ENST00000593582 TXNRD2Q9NNW7 524 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 RBPJLQ9UBG7 517 aa18.27■□□□□ 0.52
TRIM28-203ENST00000593582 BAZ2AQ9UIF9 1905 aaKnown RBP18.27■□□□□ 0.51
TRIM28-203ENST00000593582 MGAMO43451 1857 aa18.26■□□□□ 0.51
TRIM28-203ENST00000593582 ERVK-9P63128 1117 aa18.26■□□□□ 0.51
TRIM28-203ENST00000593582 ERVK-24P63145 666 aa18.26■□□□□ 0.51
TRIM28-203ENST00000593582 SEC62Q99442 399 aaKnown RBP18.26■□□□□ 0.51
TRIM28-203ENST00000593582 MKNK2Q9HBH9 465 aa18.26■□□□□ 0.51
TRIM28-203ENST00000593582 PEX10O60683 326 aa18.25■□□□□ 0.51
TRIM28-203ENST00000593582 IGHDP01880 384 aa18.25■□□□□ 0.51
TRIM28-203ENST00000593582 MAPK4P31152 587 aa18.25■□□□□ 0.51
TRIM28-203ENST00000593582 MTFR1Q15390 333 aa18.25■□□□□ 0.51
TRIM28-203ENST00000593582 LPAR1Q92633 364 aa18.25■□□□□ 0.51
TRIM28-203ENST00000593582 KANSL2Q9H9L4 492 aa18.25■□□□□ 0.51
TRIM28-203ENST00000593582 ZNF287Q9HBT7 754 aa18.25■□□□□ 0.51
TRIM28-203ENST00000593582 EPB41L4AQ9HCS5 686 aaPredicted RBP18.25■□□□□ 0.51
TRIM28-203ENST00000593582 RABGAP1Q9Y3P9 1069 aa18.25■□□□□ 0.51
TRIM28-203ENST00000593582 CCL5P13501 91 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 ELNP15502 786 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 CCNA1P78396 465 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 ATP2B2Q01814 1243 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 CHD1LQ86WJ1 897 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 CLEC10AQ8IUN9 316 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 SIAH1Q8IUQ4 282 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 IFNL3Q8IZI9 196 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 STK11IPQ8N1F8 1099 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 TANGO6Q9C0B7 1094 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 TMX2Q9Y320 296 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 KIAA0100Q14667 2235 aaKnown RBP18.24■□□□□ 0.51
TRIM28-203ENST00000593582 ROBO3Q96MS0 1386 aa18.24■□□□□ 0.51
TRIM28-203ENST00000593582 RBBP6Q7Z6E9 1792 aaKnown RBP18.23■□□□□ 0.51
TRIM28-203ENST00000593582 NUCB1Q02818 461 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms