RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 RBM25P49756 843 aaKnown RBP16.04■□□□□ 0.16
VMP1-210ENST00000589823 ATP2B2Q01814 1243 aa16.04■□□□□ 0.16
VMP1-210ENST00000589823 BLOC1S2Q6QNY1 142 aa16.04■□□□□ 0.16
VMP1-210ENST00000589823 CYB5R4Q7L1T6 521 aa16.04■□□□□ 0.16
VMP1-210ENST00000589823 CCDC84Q86UT8 332 aaPredicted RBP16.04■□□□□ 0.16
VMP1-210ENST00000589823 CEP95Q96GE4 821 aa16.04■□□□□ 0.16
VMP1-210ENST00000589823 ZKSCAN3Q9BRR0 538 aa16.04■□□□□ 0.16
VMP1-210ENST00000589823 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.04■□□□□ 0.16
VMP1-210ENST00000589823 TM6SF1Q9BZW5 370 aa16.04■□□□□ 0.16
VMP1-210ENST00000589823 MTMR4Q9NYA4 1195 aa16.04■□□□□ 0.16
VMP1-210ENST00000589823 IFIT3O14879 490 aaKnown RBP16.03■□□□□ 0.16
VMP1-210ENST00000589823 PRC1O43663 620 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 TTLL1O95922 423 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 CASTP20810 708 aaKnown RBP16.03■□□□□ 0.16
VMP1-210ENST00000589823 PPIL2Q13356 520 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 DEFB115Q30KQ5 88 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 DHX32Q7L7V1 743 aaKnown RBP16.03■□□□□ 0.16
VMP1-210ENST00000589823 RASAL3Q86YV0 1011 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 ZNF280CQ8ND82 737 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 NKX2-3Q8TAU0 364 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 CNKSR2Q8WXI2 1034 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 CCDC102AQ96A19 550 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 WNK4Q96J92 1243 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 ZSCAN10Q96SZ4 725 aaPredicted RBP16.03■□□□□ 0.16
VMP1-210ENST00000589823 FEZ1Q99689 392 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 WDR18Q9BV38 432 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 SH2D4AQ9H788 454 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 NYAP2Q9P242 653 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 CLIP2Q9UDT6 1046 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 STX8Q9UNK0 236 aa16.03■□□□□ 0.16
VMP1-210ENST00000589823 TNKSO95271 1327 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 RASSF10A6NK89 507 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 NMT2O60551 498 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 ZBTB48P10074 688 aaPredicted RBP16.02■□□□□ 0.16
VMP1-210ENST00000589823 EEF2P13639 858 aaKnown RBP16.02■□□□□ 0.16
VMP1-210ENST00000589823 HSPA6P17066 643 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 SPRYD7Q5W111 196 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 CHST3Q7LGC8 479 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 CLEC10AQ8IUN9 316 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 TMEM87BQ96K49 555 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 TTC14Q96N46 770 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 TBC1D32Q96NH3 1257 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 MTA3Q9BTC8 594 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 IL17RBQ9NRM6 502 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 AFG3L2Q9Y4W6 797 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 CYP46A1Q9Y6A2 500 aa16.02■□□□□ 0.16
VMP1-210ENST00000589823 WDR19Q8NEZ3 1342 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 TRIM75PA6NK02 468 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 USP17L10C9JJH3 530 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 CXCL11O14625 94 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 SLC10A3P09131 477 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 RPS6KB1P23443 525 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 ECE1P42892 770 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 ANTXR2P58335 489 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 FGD1P98174 961 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 SPP2Q13103 211 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 GRM1Q13255 1194 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 TMEM67Q5HYA8 995 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 RUFY3Q7L099 469 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 DGKHQ86XP1 1220 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 IL17RAQ96F46 866 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 ZSWIM6Q9HCJ5 1215 aa16.01■□□□□ 0.15
VMP1-210ENST00000589823 GREB1LQ9C091 1923 aaPredicted RBP16.01■□□□□ 0.15
VMP1-210ENST00000589823 C19orf81C9J6K1 198 aa16■□□□□ 0.15
VMP1-210ENST00000589823 IRF6O14896 467 aa16■□□□□ 0.15
VMP1-210ENST00000589823 TOP1P11387 765 aaKnown RBP16■□□□□ 0.15
VMP1-210ENST00000589823 CPA1P15085 419 aa16■□□□□ 0.15
VMP1-210ENST00000589823 GJA5P36382 358 aa16■□□□□ 0.15
VMP1-210ENST00000589823 USP14P54578 494 aa16■□□□□ 0.15
VMP1-210ENST00000589823 MKRN3Q13064 507 aaKnown RBP16■□□□□ 0.15
VMP1-210ENST00000589823 SNAPC2Q13487 334 aa16■□□□□ 0.15
VMP1-210ENST00000589823 WTAPQ15007 396 aa16■□□□□ 0.15
VMP1-210ENST00000589823 IFIT1BQ5T764 474 aaKnown RBP16■□□□□ 0.15
VMP1-210ENST00000589823 CYP4F22Q6NT55 531 aa16■□□□□ 0.15
VMP1-210ENST00000589823 ENAHQ8N8S7 591 aaPredicted RBP16■□□□□ 0.15
VMP1-210ENST00000589823 ACER1Q8TDN7 264 aa16■□□□□ 0.15
VMP1-210ENST00000589823 MKL1Q969V6 931 aa16■□□□□ 0.15
VMP1-210ENST00000589823 UPF3BQ9BZI7 483 aaKnown RBP16■□□□□ 0.15
VMP1-210ENST00000589823 KCNH4Q9UQ05 1017 aa16■□□□□ 0.15
VMP1-210ENST00000589823 TMX2Q9Y320 296 aa16■□□□□ 0.15
VMP1-210ENST00000589823 A0A1W2PRG0 241 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 NOVP48745 357 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 GTF2A2P52657 109 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 BACE1P56817 501 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 HTRA3P83110 453 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 EXOSC10Q01780 885 aaKnown RBP15.99■□□□□ 0.15
VMP1-210ENST00000589823 MTMR2Q13614 643 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 COL9A3Q14050 684 aaPredicted RBP15.99■□□□□ 0.15
VMP1-210ENST00000589823 ZYXQ15942 572 aaKnown RBP15.99■□□□□ 0.15
VMP1-210ENST00000589823 SIAH1Q8IUQ4 282 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 TMTC2Q8N394 836 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 CAPNS2Q96L46 248 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 TCEANC2Q96MN5 208 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 LRRC2Q9BYS8 371 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 KIAA1683Q9H0B3 1180 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 KAT14Q9H8E8 782 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 GOPCQ9HD26 462 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 TMOD4Q9NZQ9 345 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 SYNPO2Q9UMS6 1093 aa15.99■□□□□ 0.15
VMP1-210ENST00000589823 SH2B2O14492 632 aaPredicted RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms