RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 RAVER1Q8IY67 606 aaKnown RBP10.32□□□□□ -0.76
VMP1-208ENST00000588617 CCDC146Q8IYE0 955 aa10.32□□□□□ -0.76
VMP1-208ENST00000588617 PPP1R14AQ96A00 147 aa10.32□□□□□ -0.76
VMP1-208ENST00000588617 KLHDC7BQ96G42 594 aa10.32□□□□□ -0.76
VMP1-208ENST00000588617 SLC6A18Q96N87 628 aa10.32□□□□□ -0.76
VMP1-208ENST00000588617 AARSD1Q9BTE6 412 aaKnown RBP10.32□□□□□ -0.76
VMP1-208ENST00000588617 HIF3AQ9Y2N7 669 aa10.32□□□□□ -0.76
VMP1-208ENST00000588617 PPM1JQ5JR12 505 aa10.31□□□□□ -0.76
VMP1-208ENST00000588617 TDRD10Q5VZ19 366 aaKnown RBP10.31□□□□□ -0.76
VMP1-208ENST00000588617 CCAR1Q8IX12 1150 aaKnown RBP10.31□□□□□ -0.76
VMP1-208ENST00000588617 TARS2Q9BW92 718 aaKnown RBP10.31□□□□□ -0.76
VMP1-208ENST00000588617 MYH16Q9H6N6 1097 aa10.31□□□□□ -0.76
VMP1-208ENST00000588617 GEMIN8Q9NWZ8 242 aaKnown RBP10.31□□□□□ -0.76
VMP1-208ENST00000588617 MAGEC2Q9UBF1 373 aaPredicted RBP10.31□□□□□ -0.76
VMP1-208ENST00000588617 WASHC2CQ9Y4E1 1318 aa10.31□□□□□ -0.76
VMP1-208ENST00000588617 LOC102724159A0A0B4J2E5 919 aa10.3□□□□□ -0.76
VMP1-208ENST00000588617 ALDH1L1O75891 902 aa10.3□□□□□ -0.76
VMP1-208ENST00000588617 PWP2Q15269 919 aaKnown RBP10.3□□□□□ -0.76
VMP1-208ENST00000588617 HP1BP3Q5SSJ5 553 aaPredicted RBP10.3□□□□□ -0.76
VMP1-208ENST00000588617 HEATR6Q6AI08 1181 aaKnown RBP10.3□□□□□ -0.76
VMP1-208ENST00000588617 LRRTM3Q86VH5 581 aa10.3□□□□□ -0.76
VMP1-208ENST00000588617 MCATQ8IVS2 390 aaKnown RBP10.3□□□□□ -0.76
VMP1-208ENST00000588617 TMEM192Q8IY95 271 aa10.3□□□□□ -0.76
VMP1-208ENST00000588617 LRRN4CLQ8ND94 238 aa10.3□□□□□ -0.76
VMP1-208ENST00000588617 MRPL4Q9BYD3 311 aaKnown RBP10.3□□□□□ -0.76
VMP1-208ENST00000588617 SUCOQ9UBS9 1254 aaKnown RBP10.3□□□□□ -0.76
VMP1-208ENST00000588617 TJP2Q9UDY2 1190 aa10.3□□□□□ -0.76
VMP1-208ENST00000588617 ERBB4Q15303 1308 aa10.3□□□□□ -0.76
VMP1-208ENST00000588617 RGS13O14921 159 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 PRC1O43663 620 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 EPHX1P07099 455 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 SDSP20132 328 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 TBX4P57082 545 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 NLRP12P59046 1061 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 PPP2R2AP63151 447 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 PPFIBP1Q86W92 1011 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 SLFN12Q8IYM2 578 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 TMEM87BQ96K49 555 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 WDR18Q9BV38 432 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 RAD18Q9NS91 495 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 SUSD2Q9UGT4 822 aa10.29□□□□□ -0.76
VMP1-208ENST00000588617 NSFL1CQ9UNZ2 370 aaKnown RBP10.29□□□□□ -0.76
VMP1-208ENST00000588617 DNAJC25-GNG10A0A024R161 153 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 AOC2O75106 756 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 CPEP16870 476 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 GBP1P32455 592 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 GMPRP36959 345 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 GUCY2FP51841 1108 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 INSM1Q01101 510 aaPredicted RBP10.28□□□□□ -0.76
VMP1-208ENST00000588617 RING1Q06587 406 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 SUZ12Q15022 739 aaKnown RBP10.28□□□□□ -0.76
VMP1-208ENST00000588617 DDX46Q7L014 1031 aaKnown RBP10.28□□□□□ -0.76
VMP1-208ENST00000588617 WFDC8Q8IUA0 241 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 WDR75Q8IWA0 830 aaKnown RBP10.28□□□□□ -0.76
VMP1-208ENST00000588617 AFAP1L2Q8N4X5 818 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 KLHL23Q8NBE8 558 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 IRF7Q92985 503 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 TSR2Q969E8 191 aaKnown RBP10.28□□□□□ -0.76
VMP1-208ENST00000588617 C8orf48Q96LL4 319 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 HAUS7Q99871 368 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 GGA1Q9UJY5 639 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 STARD13Q9Y3M8 1113 aa10.28□□□□□ -0.76
VMP1-208ENST00000588617 ITGAVP06756 1048 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 MAP2K3P46734 347 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 AFF1P51825 1210 aaKnown RBP10.27□□□□□ -0.77
VMP1-208ENST00000588617 ERVK-24P63145 666 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 TTF1Q15361 905 aaPredicted RBP10.27□□□□□ -0.77
VMP1-208ENST00000588617 GORABQ5T7V8 394 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 SLC6A19Q695T7 634 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 HID1Q8IV36 788 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 LEO1Q8WVC0 666 aaPredicted RBP10.27□□□□□ -0.77
VMP1-208ENST00000588617 NANOS1Q8WY41 292 aaKnown RBP10.27□□□□□ -0.77
VMP1-208ENST00000588617 CCDC74BQ96LY2 380 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 FGD4Q96M96 766 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 INTS7Q9NVH2 962 aaKnown RBP10.27□□□□□ -0.77
VMP1-208ENST00000588617 PCDHGC5Q9Y5F6 944 aa10.27□□□□□ -0.77
VMP1-208ENST00000588617 LOC100289279A0A1B0GTE1 492 aa10.26□□□□□ -0.77
VMP1-208ENST00000588617 FANCGO15287 622 aa10.26□□□□□ -0.77
VMP1-208ENST00000588617 PRODHO43272 600 aa10.26□□□□□ -0.77
VMP1-208ENST00000588617 EPHB1P54762 984 aa10.26□□□□□ -0.77
VMP1-208ENST00000588617 SUMO1P63165 101 aaKnown RBP10.26□□□□□ -0.77
VMP1-208ENST00000588617 MAP7Q14244 749 aa10.26□□□□□ -0.77
VMP1-208ENST00000588617 ZBTB37Q5TC79 503 aa10.26□□□□□ -0.77
VMP1-208ENST00000588617 NSMFQ6X4W1 530 aa10.26□□□□□ -0.77
VMP1-208ENST00000588617 ADAT2Q7Z6V5 191 aaKnown RBP10.26□□□□□ -0.77
VMP1-208ENST00000588617 C9IYK1 514 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 CLEC3AO75596 197 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 UBOX5O94941 541 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 PABPC1P11940 636 aaKnown RBP10.25□□□□□ -0.77
VMP1-208ENST00000588617 ID3Q02535 119 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 C20orf204Q6ZNR8 217 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 STRA8Q7Z7C7 330 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 ZNF227Q86WZ6 799 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 MRPL41Q8IXM3 137 aaKnown RBP10.25□□□□□ -0.77
VMP1-208ENST00000588617 RIN3Q8TB24 985 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 ZNF507Q8TCN5 953 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 DDX1Q92499 740 aaKnown RBP10.25□□□□□ -0.77
VMP1-208ENST00000588617 SMARCC1Q92922 1105 aaPredicted RBP10.25□□□□□ -0.77
VMP1-208ENST00000588617 LGR4Q9BXB1 951 aa10.25□□□□□ -0.77
VMP1-208ENST00000588617 APEX2Q9UBZ4 518 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms