RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 AKR1B1P15121 316 aa33.76■■■□□ 2.99
LIG3-208ENST00000586407 B4GALNT3Q6L9W6 998 aa33.76■■■□□ 2.99
LIG3-208ENST00000586407 DDRGK1Q96HY6 314 aa33.76■■■□□ 2.99
LIG3-208ENST00000586407 LNPKQ9C0E8 428 aa33.76■■■□□ 2.99
LIG3-208ENST00000586407 GSG1L2A8MUP6 293 aa33.75■■■□□ 2.99
LIG3-208ENST00000586407 ZFYP08048 801 aaPredicted RBP33.75■■■□□ 2.99
LIG3-208ENST00000586407 FAM110CQ1W6H9 321 aa33.75■■■□□ 2.99
LIG3-208ENST00000586407 SWAP70Q9UH65 585 aa33.75■■■□□ 2.99
LIG3-208ENST00000586407 HOXD10P28358 340 aa33.74■■■□□ 2.99
LIG3-208ENST00000586407 HOXA7P31268 230 aaPredicted RBP33.74■■■□□ 2.99
LIG3-208ENST00000586407 GCLCP48506 637 aaPredicted RBP33.74■■■□□ 2.99
LIG3-208ENST00000586407 CDK8P49336 464 aa33.74■■■□□ 2.99
LIG3-208ENST00000586407 PRMT2P55345 433 aa33.74■■■□□ 2.99
LIG3-208ENST00000586407 IRX6P78412 446 aaPredicted RBP33.74■■■□□ 2.99
LIG3-208ENST00000586407 AAMPQ13685 434 aa33.74■■■□□ 2.99
LIG3-208ENST00000586407 AMOTL1Q8IY63 956 aa33.74■■■□□ 2.99
LIG3-208ENST00000586407 STK11IPQ8N1F8 1099 aa33.74■■■□□ 2.99
LIG3-208ENST00000586407 RAET1EQ8TD07 263 aa33.74■■■□□ 2.99
LIG3-208ENST00000586407 EPB41L4AQ9HCS5 686 aaPredicted RBP33.74■■■□□ 2.99
LIG3-208ENST00000586407 TNPO2O14787 897 aaKnown RBP33.73■■■□□ 2.99
LIG3-208ENST00000586407 PDE1AP54750 535 aa33.73■■■□□ 2.99
LIG3-208ENST00000586407 RWDD1Q9H446 243 aaPredicted RBP33.73■■■□□ 2.99
LIG3-208ENST00000586407 A0A1W2PRG0 241 aa33.72■■■□□ 2.99
LIG3-208ENST00000586407 HERVK_113P62684 666 aa33.72■■■□□ 2.99
LIG3-208ENST00000586407 C16orf86Q6ZW13 317 aa33.72■■■□□ 2.99
LIG3-208ENST00000586407 SMC5Q8IY18 1101 aa33.72■■■□□ 2.99
LIG3-208ENST00000586407 C12orf42Q96LP6 360 aa33.72■■■□□ 2.99
LIG3-208ENST00000586407 KIAA1683Q9H0B3 1180 aa33.72■■■□□ 2.99
LIG3-208ENST00000586407 TXNRD2Q9NNW7 524 aa33.72■■■□□ 2.99
LIG3-208ENST00000586407 STAP2Q9UGK3 403 aa33.72■■■□□ 2.99
LIG3-208ENST00000586407 NBPF11Q86T75 865 aa33.71■■■□□ 2.99
LIG3-208ENST00000586407 VCAM1P19320 739 aa33.7■■■□□ 2.99
LIG3-208ENST00000586407 POTEEQ6S8J3 1075 aa33.7■■■□□ 2.99
LIG3-208ENST00000586407 ARPP21Q9UBL0 812 aaPredicted RBP33.7■■■□□ 2.99
LIG3-208ENST00000586407 FLT3LGP49771 235 aa33.69■■■□□ 2.98
LIG3-208ENST00000586407 ZMYM1Q5SVZ6 1142 aa33.69■■■□□ 2.98
LIG3-208ENST00000586407 TMEM179Q6ZVK1 233 aa33.69■■■□□ 2.98
LIG3-208ENST00000586407 MINDY4BA8MYZ0 360 aa33.68■■■□□ 2.98
LIG3-208ENST00000586407 GRK4P32298 578 aa33.68■■■□□ 2.98
LIG3-208ENST00000586407 USP14P54578 494 aa33.68■■■□□ 2.98
LIG3-208ENST00000586407 LRRFIP1Q32MZ4 808 aaKnown RBP33.68■■■□□ 2.98
LIG3-208ENST00000586407 PAGR1Q9BTK6 254 aa33.68■■■□□ 2.98
LIG3-208ENST00000586407 MORF4L1Q9UBU8 362 aa33.68■■■□□ 2.98
LIG3-208ENST00000586407 PLXNB2O15031 1838 aa33.67■■■□□ 2.98
LIG3-208ENST00000586407 APPP05067 770 aa33.67■■■□□ 2.98
LIG3-208ENST00000586407 EN2P19622 333 aaPredicted RBP33.67■■■□□ 2.98
LIG3-208ENST00000586407 MTFR1Q15390 333 aa33.67■■■□□ 2.98
LIG3-208ENST00000586407 CCDC129Q6ZRS4 1044 aa33.67■■■□□ 2.98
LIG3-208ENST00000586407 RBPJLQ9UBG7 517 aa33.67■■■□□ 2.98
LIG3-208ENST00000586407 TAOK2Q9UL54 1235 aa33.67■■■□□ 2.98
LIG3-208ENST00000586407 CENPFP49454 3210 aa33.66■■■□□ 2.98
LIG3-208ENST00000586407 TDO2P48775 406 aa33.66■■■□□ 2.98
LIG3-208ENST00000586407 KIAA1755Q5JYT7 1200 aa33.66■■■□□ 2.98
LIG3-208ENST00000586407 SIAH1Q8IUQ4 282 aa33.66■■■□□ 2.98
LIG3-208ENST00000586407 RPAP3Q9H6T3 665 aaPredicted RBP33.66■■■□□ 2.98
LIG3-208ENST00000586407 GREB1LQ9C091 1923 aaPredicted RBP33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L15C9J2P7 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L13C9JLJ4 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L11C9JVI0 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L18D6R9N7 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L22D6RA61 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L17D6RBQ6 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L19D6RCP7 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L20D6RJB6 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 ELNP15502 786 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 ICA1Q05084 483 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 USP17L24Q0WX57 530 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 SBK1Q52WX2 424 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 COA7Q96BR5 231 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 TMEM106CQ9BVX2 250 aa33.65■■■□□ 2.98
LIG3-208ENST00000586407 PDE4DIPQ5VU43 2346 aa33.64■■■□□ 2.98
LIG3-208ENST00000586407 Q3C1V9 767 aa33.64■■■□□ 2.98
LIG3-208ENST00000586407 GIMAP6Q6P9H5 292 aa33.64■■■□□ 2.98
LIG3-208ENST00000586407 CATSPERGQ6ZRH7 1159 aa33.64■■■□□ 2.98
LIG3-208ENST00000586407 BIN2Q9UBW5 565 aaPredicted RBP33.64■■■□□ 2.98
LIG3-208ENST00000586407 ADCY3O60266 1144 aa33.63■■■□□ 2.97
LIG3-208ENST00000586407 GNAT2P19087 354 aa33.63■■■□□ 2.97
LIG3-208ENST00000586407 CHD1LQ86WJ1 897 aa33.63■■■□□ 2.97
LIG3-208ENST00000586407 IFNL3Q8IZI9 196 aa33.63■■■□□ 2.97
LIG3-208ENST00000586407 EVI5LQ96CN4 794 aa33.63■■■□□ 2.97
LIG3-208ENST00000586407 CCDC17Q96LX7 622 aa33.63■■■□□ 2.97
LIG3-208ENST00000586407 ROBO3Q96MS0 1386 aa33.62■■■□□ 2.97
LIG3-208ENST00000586407 ATP2B2Q01814 1243 aa33.62■■■□□ 2.97
LIG3-208ENST00000586407 GPRC5AQ8NFJ5 357 aa33.62■■■□□ 2.97
LIG3-208ENST00000586407 TNRC18O15417 2968 aaPredicted RBP33.62■■■□□ 2.97
LIG3-208ENST00000586407 RLFQ13129 1914 aa33.61■■■□□ 2.97
LIG3-208ENST00000586407 PATL2C9JE40 543 aaKnown RBP33.61■■■□□ 2.97
LIG3-208ENST00000586407 ERVK-9P63128 1117 aa33.61■■■□□ 2.97
LIG3-208ENST00000586407 ERVK-24P63145 666 aa33.61■■■□□ 2.97
LIG3-208ENST00000586407 NUCB1Q02818 461 aa33.61■■■□□ 2.97
LIG3-208ENST00000586407 PORCNQ9H237 461 aa33.61■■■□□ 2.97
LIG3-208ENST00000586407 ARHGEF10LQ9HCE6 1279 aa33.61■■■□□ 2.97
LIG3-208ENST00000586407 CNMDO75829 334 aa33.6■■■□□ 2.97
LIG3-208ENST00000586407 RASA1P20936 1047 aa33.6■■■□□ 2.97
LIG3-208ENST00000586407 SPICE1Q8N0Z3 855 aa33.6■■■□□ 2.97
LIG3-208ENST00000586407 SLAIN1Q8ND83 568 aa33.6■■■□□ 2.97
LIG3-208ENST00000586407 GNL3Q9BVP2 549 aaKnown RBP eCLIP33.6■■■□□ 2.97
LIG3-208ENST00000586407 PARP14Q460N5 1801 aa33.59■■■□□ 2.97
LIG3-208ENST00000586407 FOXP2O15409 715 aa33.59■■■□□ 2.97
LIG3-208ENST00000586407 PRDM1O75626 825 aa33.59■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms