RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 KIAA1683Q9H0B3 1180 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 SWAP70Q9UH65 585 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 ROBO3Q96MS0 1386 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 PDE4DIPQ5VU43 2346 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 POTEFA5A3E0 1075 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 FOXP2O15409 715 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 PEX10O60683 326 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 AKR1B1P15121 316 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 CDK8P49336 464 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 PRMT2P55345 433 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 PRKCZQ05513 592 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 PABPC4Q13310 644 aaKnown RBP eCLIP18.23■□□□□ 0.51
CLIP3-202ENST00000585466 SBK1Q52WX2 424 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 USP17L2Q6R6M4 530 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 P2RX7Q99572 595 aaKnown RBP18.23■□□□□ 0.51
CLIP3-202ENST00000585466 TXNRD2Q9NNW7 524 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 TMOD4Q9NZQ9 345 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 MORF4L1Q9UBU8 362 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 GABRQQ9UN88 632 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 PARP14Q460N5 1801 aa18.23■□□□□ 0.51
CLIP3-202ENST00000585466 FMNL1O95466 1100 aaPredicted RBP18.22■□□□□ 0.51
CLIP3-202ENST00000585466 GCLCP48506 637 aaPredicted RBP18.22■□□□□ 0.51
CLIP3-202ENST00000585466 FCGRTP55899 365 aa18.22■□□□□ 0.51
CLIP3-202ENST00000585466 GIMAP6Q6P9H5 292 aa18.22■□□□□ 0.51
CLIP3-202ENST00000585466 CLEC10AQ8IUN9 316 aa18.22■□□□□ 0.51
CLIP3-202ENST00000585466 LNPKQ9C0E8 428 aa18.22■□□□□ 0.51
CLIP3-202ENST00000585466 MKI67P46013 3256 aaKnown RBP18.22■□□□□ 0.51
CLIP3-202ENST00000585466 MYPNQ86TC9 1320 aa18.22■□□□□ 0.51
CLIP3-202ENST00000585466 A0A0G2JMZ2 1700 aa18.21■□□□□ 0.51
CLIP3-202ENST00000585466 VCAM1P19320 739 aa18.21■□□□□ 0.51
CLIP3-202ENST00000585466 HERVK_113P62684 666 aa18.21■□□□□ 0.51
CLIP3-202ENST00000585466 ZYXQ15942 572 aaKnown RBP18.21■□□□□ 0.51
CLIP3-202ENST00000585466 SLC9C1Q4G0N8 1177 aa18.21■□□□□ 0.51
CLIP3-202ENST00000585466 KIAA1755Q5JYT7 1200 aa18.21■□□□□ 0.51
CLIP3-202ENST00000585466 SH3TC2Q8TF17 1288 aa18.21■□□□□ 0.51
CLIP3-202ENST00000585466 FSD1Q9BTV5 496 aa18.21■□□□□ 0.51
CLIP3-202ENST00000585466 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.21■□□□□ 0.51
CLIP3-202ENST00000585466 RWDD1Q9H446 243 aaPredicted RBP18.21■□□□□ 0.51
CLIP3-202ENST00000585466 CABP5Q9NP86 173 aa18.21■□□□□ 0.51
CLIP3-202ENST00000585466 ARPP21Q9UBL0 812 aaPredicted RBP18.21■□□□□ 0.51
CLIP3-202ENST00000585466 NUCB1Q02818 461 aa18.2■□□□□ 0.5
CLIP3-202ENST00000585466 TMEM179Q6ZVK1 233 aa18.2■□□□□ 0.5
CLIP3-202ENST00000585466 RBPJLQ9UBG7 517 aa18.2■□□□□ 0.5
CLIP3-202ENST00000585466 CNMDO75829 334 aa18.19■□□□□ 0.5
CLIP3-202ENST00000585466 USP14P54578 494 aa18.19■□□□□ 0.5
CLIP3-202ENST00000585466 IRX3P78415 501 aaPredicted RBP18.19■□□□□ 0.5
CLIP3-202ENST00000585466 CHD1LQ86WJ1 897 aa18.19■□□□□ 0.5
CLIP3-202ENST00000585466 FEZ1Q99689 392 aa18.19■□□□□ 0.5
CLIP3-202ENST00000585466 MPHOSPH10O00566 681 aaKnown RBP18.18■□□□□ 0.5
CLIP3-202ENST00000585466 RASA1P20936 1047 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 HOXD10P28358 340 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 FLT3LGP49771 235 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 B4GALNT3Q6L9W6 998 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 CATSPERGQ6ZRH7 1159 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 PLEKHM2Q8IWE5 1019 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 EVI5LQ96CN4 794 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 CCDC17Q96LX7 622 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 GJD2Q9UKL4 321 aa18.18■□□□□ 0.5
CLIP3-202ENST00000585466 PATL2C9JE40 543 aaKnown RBP18.17■□□□□ 0.5
CLIP3-202ENST00000585466 TNPO2O14787 897 aaKnown RBP18.17■□□□□ 0.5
CLIP3-202ENST00000585466 GNAT2P19087 354 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 GRK4P32298 578 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 IRF5Q13568 498 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 MTFR1Q15390 333 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 LRRFIP1Q32MZ4 808 aaKnown RBP18.17■□□□□ 0.5
CLIP3-202ENST00000585466 Q3C1V9 767 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 LBX2Q6XYB7 198 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 CCDC129Q6ZRS4 1044 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 IFNL3Q8IZI9 196 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 DDRGK1Q96HY6 314 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 OSBPL3Q9H4L5 887 aa18.17■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L15C9J2P7 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L13C9JLJ4 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L11C9JVI0 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L18D6R9N7 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L22D6RA61 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L17D6RBQ6 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L19D6RCP7 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L20D6RJB6 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 USP17L24Q0WX57 530 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 AMOTL1Q8IY63 956 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 RAET1EQ8TD07 263 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 RPAP3Q9H6T3 665 aaPredicted RBP18.16■□□□□ 0.5
CLIP3-202ENST00000585466 TMX2Q9Y320 296 aa18.16■□□□□ 0.5
CLIP3-202ENST00000585466 IGKV6D-41A0A0C4DH26 115 aa18.15■□□□□ 0.5
CLIP3-202ENST00000585466 SPDYE16A6NNV3 312 aaPredicted RBP18.15■□□□□ 0.5
CLIP3-202ENST00000585466 EN2P19622 333 aaPredicted RBP18.15■□□□□ 0.5
CLIP3-202ENST00000585466 ERVK-9P63128 1117 aa18.15■□□□□ 0.5
CLIP3-202ENST00000585466 ERVK-24P63145 666 aa18.15■□□□□ 0.5
CLIP3-202ENST00000585466 IRX6P78412 446 aaPredicted RBP18.15■□□□□ 0.5
CLIP3-202ENST00000585466 ICA1Q05084 483 aa18.15■□□□□ 0.5
CLIP3-202ENST00000585466 NBPF11Q86T75 865 aa18.15■□□□□ 0.5
CLIP3-202ENST00000585466 PORCNQ9H237 461 aa18.15■□□□□ 0.5
CLIP3-202ENST00000585466 ZBTB47Q9UFB7 747 aaPredicted RBP18.15■□□□□ 0.5
CLIP3-202ENST00000585466 MYH4Q9Y623 1939 aa18.14■□□□□ 0.49
CLIP3-202ENST00000585466 A0A0D9SFI3 127 aa18.14■□□□□ 0.49
CLIP3-202ENST00000585466 MINDY4BA8MYZ0 360 aa18.14■□□□□ 0.49
CLIP3-202ENST00000585466 ADCY3O60266 1144 aa18.14■□□□□ 0.49
CLIP3-202ENST00000585466 ELNP15502 786 aa18.14■□□□□ 0.49
CLIP3-202ENST00000585466 VPS53Q5VIR6 699 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms