RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 METAP2P50579 478 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIG3-203ENST00000585370 CCT2P78371 535 aaKnown RBP12.12□□□□□ -0.47
LIG3-203ENST00000585370 ATL3Q6DD88 541 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 APOA5Q6Q788 366 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 KIAA0825Q8IV33 1275 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 TMEM87AQ8NBN3 555 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 ZBED3Q96IU2 234 aaPredicted RBP12.12□□□□□ -0.47
LIG3-203ENST00000585370 MCM9Q9NXL9 1143 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 TAOK2Q9UL54 1235 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 HPS5Q9UPZ3 1129 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 JAG2Q9Y219 1238 aa12.12□□□□□ -0.47
LIG3-203ENST00000585370 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIG3-203ENST00000585370 NID2Q14112 1375 aa12.11□□□□□ -0.47
LIG3-203ENST00000585370 PRPF40AO75400 957 aaKnown RBP12.11□□□□□ -0.47
LIG3-203ENST00000585370 CTDNEP1O95476 244 aa12.11□□□□□ -0.47
LIG3-203ENST00000585370 MMP14P50281 582 aa12.11□□□□□ -0.47
LIG3-203ENST00000585370 MLLT1Q03111 559 aaPredicted RBP12.11□□□□□ -0.47
LIG3-203ENST00000585370 DIXDC1Q155Q3 683 aa12.11□□□□□ -0.47
LIG3-203ENST00000585370 FOXD4L5Q5VV16 416 aaPredicted RBP12.11□□□□□ -0.47
LIG3-203ENST00000585370 TEX11Q8IYF3 940 aa12.11□□□□□ -0.47
LIG3-203ENST00000585370 REM2Q8IYK8 340 aaPredicted RBP12.11□□□□□ -0.47
LIG3-203ENST00000585370 SH3RF3Q8TEJ3 882 aaPredicted RBP12.11□□□□□ -0.47
LIG3-203ENST00000585370 FOXD4L4Q8WXT5 416 aaPredicted RBP12.11□□□□□ -0.47
LIG3-203ENST00000585370 WASF1Q92558 559 aa12.11□□□□□ -0.47
LIG3-203ENST00000585370 ZSCAN10Q96SZ4 725 aaPredicted RBP12.11□□□□□ -0.47
LIG3-203ENST00000585370 DDX49Q9Y6V7 483 aaKnown RBP12.11□□□□□ -0.47
LIG3-203ENST00000585370 PAPPA2Q9BXP8 1791 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 GOLGA8AA7E2F4 631 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 RANBP6O60518 1105 aaKnown RBP12.1□□□□□ -0.47
LIG3-203ENST00000585370 JAK2O60674 1132 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 POLR3DP05423 398 aaPredicted RBP12.1□□□□□ -0.47
LIG3-203ENST00000585370 SEC23AQ15436 765 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 GRIK5Q16478 980 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 CERS5Q8N5B7 392 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 TGFBRAP1Q8WUH2 860 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 TEKT1Q969V4 418 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 SCAND2PQ9GZW5 306 aaPredicted RBP12.1□□□□□ -0.47
LIG3-203ENST00000585370 NCOA5Q9HCD5 579 aaKnown RBP12.1□□□□□ -0.47
LIG3-203ENST00000585370 INCENPQ9NQS7 918 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 GPHNQ9NQX3 736 aaPredicted RBP12.1□□□□□ -0.47
LIG3-203ENST00000585370 ORC3Q9UBD5 711 aaPredicted RBP12.1□□□□□ -0.47
LIG3-203ENST00000585370 ISY1Q9ULR0 285 aaKnown RBP12.1□□□□□ -0.47
LIG3-203ENST00000585370 TACC3Q9Y6A5 838 aa12.1□□□□□ -0.47
LIG3-203ENST00000585370 ROBO3Q96MS0 1386 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 RHBDL3P58872 404 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 KRT85P78386 507 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 TTLL12Q14166 644 aaPredicted RBP12.09□□□□□ -0.47
LIG3-203ENST00000585370 CATIPQ7Z7H3 387 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 TTC6Q86TZ1 520 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 DGKHQ86XP1 1220 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 ZNF444Q8N0Y2 327 aaPredicted RBP12.09□□□□□ -0.47
LIG3-203ENST00000585370 ANKS1AQ92625 1134 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 DDX11Q96FC9 970 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 MKNK2Q9HBH9 465 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 TCP11L1Q9NUJ3 509 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 RBM28Q9NW13 759 aaKnown RBP12.09□□□□□ -0.47
LIG3-203ENST00000585370 HDAC9Q9UKV0 1011 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 CFAP45Q9UL16 551 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 TTF2Q9UNY4 1162 aaKnown RBP12.09□□□□□ -0.47
LIG3-203ENST00000585370 DAGLAQ9Y4D2 1042 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 PCDHAC2Q9Y5I4 1007 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 CENPFP49454 3210 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 STK36Q9NRP7 1315 aa12.09□□□□□ -0.47
LIG3-203ENST00000585370 NPM3O75607 178 aaKnown RBP12.08□□□□□ -0.48
LIG3-203ENST00000585370 DDAH1O94760 285 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 TBC1D8O95759 1140 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 IFNAR1P17181 557 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 NF2P35240 595 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 TM4SF4P48230 202 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 SSRP1Q08945 709 aaKnown RBP12.08□□□□□ -0.48
LIG3-203ENST00000585370 RTN1Q16799 776 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 IFIT1BQ5T764 474 aaKnown RBP12.08□□□□□ -0.48
LIG3-203ENST00000585370 APOBEC3FQ8IUX4 373 aaKnown RBP12.08□□□□□ -0.48
LIG3-203ENST00000585370 TRIM22Q8IYM9 498 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 FANCBQ8NB91 859 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 SYAP1Q96A49 352 aaPredicted RBP12.08□□□□□ -0.48
LIG3-203ENST00000585370 MAP3K14Q99558 947 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 TNKSO95271 1327 aa12.08□□□□□ -0.48
LIG3-203ENST00000585370 MYH2Q9UKX2 1941 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 CYP2D7A0A087X1C5 515 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 TSPY2A6NKD2 308 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 FDPSP14324 419 aaKnown RBP12.07□□□□□ -0.48
LIG3-203ENST00000585370 ADD1P35611 737 aaKnown RBP12.07□□□□□ -0.48
LIG3-203ENST00000585370 UBE2HP62256 183 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 MKRN3Q13064 507 aaKnown RBP12.07□□□□□ -0.48
LIG3-203ENST00000585370 PRKG1Q13976 671 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 DLGAP5Q15398 846 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 LDLRAD1Q5T700 205 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 MICU3Q86XE3 530 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 ZNF654Q8IZM8 581 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 MTMR14Q8NCE2 650 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 FBXO18Q8NFZ0 1043 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 C8orf76Q96K31 380 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 ZDHHC15Q96MV8 337 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 ZNF396Q96N95 335 aaPredicted RBP12.07□□□□□ -0.48
LIG3-203ENST00000585370 DEFB129Q9H1M3 183 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 SERPINA10Q9UK55 444 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 FZD1Q9UP38 647 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 ELP1O95163 1332 aa12.07□□□□□ -0.48
LIG3-203ENST00000585370 PDE4DIPQ5VU43 2346 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms