RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TMEM179Q6ZVK1 233 aa23.26■■□□□ 1.31
SS18-209ENST00000578595 SLC45A1Q9Y2W3 748 aa23.26■■□□□ 1.31
SS18-209ENST00000578595 CENPBP07199 599 aaPredicted RBP23.25■■□□□ 1.31
SS18-209ENST00000578595 ATP2B2Q01814 1243 aa23.25■■□□□ 1.31
SS18-209ENST00000578595 ARHGEF6Q15052 776 aa23.25■■□□□ 1.31
SS18-209ENST00000578595 SH3D19Q5HYK7 790 aa23.25■■□□□ 1.31
SS18-209ENST00000578595 IFFO2Q5TF58 517 aa23.25■■□□□ 1.31
SS18-209ENST00000578595 CCDC17Q96LX7 622 aa23.25■■□□□ 1.31
SS18-209ENST00000578595 EFCC1Q9HA90 598 aa23.25■■□□□ 1.31
SS18-209ENST00000578595 TAOK2Q9UL54 1235 aa23.25■■□□□ 1.31
SS18-209ENST00000578595 SLC3A2P08195 630 aaKnown RBP23.24■■□□□ 1.31
SS18-209ENST00000578595 SDSP20132 328 aa23.24■■□□□ 1.31
SS18-209ENST00000578595 ICA1Q05084 483 aa23.24■■□□□ 1.31
SS18-209ENST00000578595 TTC22Q5TAA0 569 aa23.24■■□□□ 1.31
SS18-209ENST00000578595 OTOP1Q7RTM1 612 aa23.24■■□□□ 1.31
SS18-209ENST00000578595 CLEC10AQ8IUN9 316 aa23.24■■□□□ 1.31
SS18-209ENST00000578595 ACER1Q8TDN7 264 aa23.24■■□□□ 1.31
SS18-209ENST00000578595 CCDC85CA6NKD9 419 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 HIP1O00291 1037 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 USP14P54578 494 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 PKN2Q16513 984 aaKnown RBP23.23■■□□□ 1.31
SS18-209ENST00000578595 CWC27Q6UX04 472 aaKnown RBP23.23■■□□□ 1.31
SS18-209ENST00000578595 C17orf99Q6UX52 265 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 ASCC2Q9H1I8 757 aaPredicted RBP23.23■■□□□ 1.31
SS18-209ENST00000578595 ZNF287Q9HBT7 754 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 ARHGEF10LQ9HCE6 1279 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 CCDC171Q6TFL3 1326 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 ADGRA2Q96PE1 1338 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 ROBO3Q96MS0 1386 aa23.23■■□□□ 1.31
SS18-209ENST00000578595 GREB1LQ9C091 1923 aaPredicted RBP23.23■■□□□ 1.31
SS18-209ENST00000578595 PRDM1O75626 825 aa23.22■■□□□ 1.31
SS18-209ENST00000578595 GUCY1A2P33402 732 aa23.22■■□□□ 1.31
SS18-209ENST00000578595 MFAP1P55081 439 aaKnown RBP23.22■■□□□ 1.31
SS18-209ENST00000578595 LACTBP83111 547 aaPredicted RBP23.22■■□□□ 1.31
SS18-209ENST00000578595 VPS53Q5VIR6 699 aa23.22■■□□□ 1.31
SS18-209ENST00000578595 ARHGAP39Q9C0H5 1083 aa23.22■■□□□ 1.31
SS18-209ENST00000578595 DOCK3Q8IZD9 2030 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 RAD21O60216 631 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 PPARAQ07869 468 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 FBXO46Q6PJ61 603 aaPredicted RBP23.21■■□□□ 1.31
SS18-209ENST00000578595 CENPQQ7L2Z9 268 aaPredicted RBP23.21■■□□□ 1.31
SS18-209ENST00000578595 ZNF589Q86UQ0 364 aaPredicted RBP23.21■■□□□ 1.31
SS18-209ENST00000578595 TICAM2Q86XR7 235 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 ZNF444Q8N0Y2 327 aaPredicted RBP23.21■■□□□ 1.31
SS18-209ENST00000578595 ANKRD13CQ8N6S4 541 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 CCDC136Q96JN2 1154 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 SH2D4AQ9H788 454 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 EMILIN3Q9NT22 766 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 LAMA4Q16363 1823 aa23.21■■□□□ 1.31
SS18-209ENST00000578595 FMNL1O95466 1100 aaPredicted RBP23.2■■□□□ 1.3
SS18-209ENST00000578595 PDE4BQ07343 736 aa23.2■■□□□ 1.3
SS18-209ENST00000578595 KIAA1683Q9H0B3 1180 aa23.2■■□□□ 1.3
SS18-209ENST00000578595 GSPT1P15170 499 aaKnown RBP23.19■■□□□ 1.3
SS18-209ENST00000578595 RASA1P20936 1047 aa23.19■■□□□ 1.3
SS18-209ENST00000578595 CTDSPL2Q05D32 466 aa23.19■■□□□ 1.3
SS18-209ENST00000578595 TOMM22Q9NS69 142 aa23.19■■□□□ 1.3
SS18-209ENST00000578595 BCRP11274 1271 aa23.18■■□□□ 1.3
SS18-209ENST00000578595 VCAM1P19320 739 aa23.18■■□□□ 1.3
SS18-209ENST00000578595 PSMC4P43686 418 aa23.18■■□□□ 1.3
SS18-209ENST00000578595 HPS5Q9UPZ3 1129 aa23.18■■□□□ 1.3
SS18-209ENST00000578595 HSPD1P10809 573 aaKnown RBP23.17■■□□□ 1.3
SS18-209ENST00000578595 GCLCP48506 637 aaPredicted RBP23.17■■□□□ 1.3
SS18-209ENST00000578595 FCGRTP55899 365 aa23.17■■□□□ 1.3
SS18-209ENST00000578595 CAP1Q01518 475 aa23.17■■□□□ 1.3
SS18-209ENST00000578595 C12orf42Q96LP6 360 aa23.17■■□□□ 1.3
SS18-209ENST00000578595 PAGR1Q9BTK6 254 aa23.17■■□□□ 1.3
SS18-209ENST00000578595 TANGO6Q9C0B7 1094 aa23.17■■□□□ 1.3
SS18-209ENST00000578595 RPAP3Q9H6T3 665 aaPredicted RBP23.17■■□□□ 1.3
SS18-209ENST00000578595 KANSL2Q9H9L4 492 aa23.17■■□□□ 1.3
SS18-209ENST00000578595 A0A1W2PRG0 241 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L15C9J2P7 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L13C9JLJ4 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L11C9JVI0 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L18D6R9N7 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L22D6RA61 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L17D6RBQ6 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L19D6RCP7 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L20D6RJB6 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 FOXP2O15409 715 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 TSPY3P0CV98 308 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 TSPY8P0CW00 308 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 EEF2P13639 858 aaKnown RBP23.16■■□□□ 1.3
SS18-209ENST00000578595 USP17L24Q0WX57 530 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 SAMD1Q6SPF0 538 aaPredicted RBP23.16■■□□□ 1.3
SS18-209ENST00000578595 SPICE1Q8N0Z3 855 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 P2RX7Q99572 595 aaKnown RBP23.16■■□□□ 1.3
SS18-209ENST00000578595 PARP14Q460N5 1801 aa23.16■■□□□ 1.3
SS18-209ENST00000578595 HOXA7P31268 230 aaPredicted RBP23.15■■□□□ 1.3
SS18-209ENST00000578595 HERVK_113P62684 666 aa23.15■■□□□ 1.3
SS18-209ENST00000578595 FAM110CQ1W6H9 321 aa23.15■■□□□ 1.3
SS18-209ENST00000578595 PTPN22Q9Y2R2 807 aa23.15■■□□□ 1.3
SS18-209ENST00000578595 COL11A1P12107 1806 aaPredicted RBP23.15■■□□□ 1.3
SS18-209ENST00000578595 TNPO2O14787 897 aaKnown RBP23.14■■□□□ 1.29
SS18-209ENST00000578595 FGAP02671 866 aa23.14■■□□□ 1.29
SS18-209ENST00000578595 HOXD10P28358 340 aa23.14■■□□□ 1.29
SS18-209ENST00000578595 HAND2P61296 217 aa23.14■■□□□ 1.29
SS18-209ENST00000578595 FAM47AQ5JRC9 791 aa23.14■■□□□ 1.29
SS18-209ENST00000578595 RRP12Q5JTH9 1297 aaKnown RBP23.14■■□□□ 1.29
SS18-209ENST00000578595 CCAR1Q8IX12 1150 aaKnown RBP23.14■■□□□ 1.29
SS18-209ENST00000578595 TRIM47Q96LD4 638 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms