RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 ANAPC15P60006 121 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 PPP4R3BQ5MIZ7 849 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 MB21D2Q8IYB1 491 aaPredicted RBP21.47■■□□□ 1.03
CCDC40-213ENST00000574933 CNKSR2Q8WXI2 1034 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 MTA3Q9BTC8 594 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 IL17RBQ9NRM6 502 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 MTMR4Q9NYA4 1195 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 ZSWIM5Q9P217 1185 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 NYAP2Q9P242 653 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 ZHX2Q9Y6X8 837 aa21.47■■□□□ 1.03
CCDC40-213ENST00000574933 CXCL11O14625 94 aa21.46■■□□□ 1.03
CCDC40-213ENST00000574933 RAB3GAP1Q15042 981 aa21.46■■□□□ 1.03
CCDC40-213ENST00000574933 SIAH1Q8IUQ4 282 aa21.46■■□□□ 1.03
CCDC40-213ENST00000574933 ZNF280CQ8ND82 737 aa21.46■■□□□ 1.03
CCDC40-213ENST00000574933 OTUD5Q96G74 571 aa21.46■■□□□ 1.03
CCDC40-213ENST00000574933 IRF6O14896 467 aa21.45■■□□□ 1.02
CCDC40-213ENST00000574933 ECE1P42892 770 aa21.45■■□□□ 1.02
CCDC40-213ENST00000574933 ICA1Q05084 483 aa21.45■■□□□ 1.02
CCDC40-213ENST00000574933 ADCK5Q3MIX3 580 aa21.45■■□□□ 1.02
CCDC40-213ENST00000574933 CCDC178Q5BJE1 867 aa21.45■■□□□ 1.02
CCDC40-213ENST00000574933 RALYLQ86SE5 291 aaKnown RBP21.45■■□□□ 1.02
CCDC40-213ENST00000574933 CCDC84Q86UT8 332 aaPredicted RBP21.45■■□□□ 1.02
CCDC40-213ENST00000574933 MKL1Q969V6 931 aa21.45■■□□□ 1.02
CCDC40-213ENST00000574933 CEP95Q96GE4 821 aa21.45■■□□□ 1.02
CCDC40-213ENST00000574933 SYNPO2Q9UMS6 1093 aa21.45■■□□□ 1.02
CCDC40-213ENST00000574933 HTRA3P83110 453 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 SH3D19Q5HYK7 790 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 CYP4F22Q6NT55 531 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 CYB5R4Q7L1T6 521 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 IQCA1Q86XH1 822 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 ANKS1AQ92625 1134 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 CAPNS2Q96L46 248 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 TTC14Q96N46 770 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 NEK1Q96PY6 1258 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 TM6SF1Q9BZW5 370 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 WDR19Q8NEZ3 1342 aa21.44■■□□□ 1.02
CCDC40-213ENST00000574933 C19orf81C9J6K1 198 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 TTLL1O95922 423 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 HMGB1P09429 215 aaKnown RBP21.43■■□□□ 1.02
CCDC40-213ENST00000574933 EEF2P13639 858 aaKnown RBP21.43■■□□□ 1.02
CCDC40-213ENST00000574933 BACE1P56817 501 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 ANTXR2P58335 489 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 SPP2Q13103 211 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 NOGQ13253 232 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 MS4A4AQ96JQ5 239 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 KIAA1683Q9H0B3 1180 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 ARHGEF10LQ9HCE6 1279 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 TMX2Q9Y320 296 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 PARP14Q460N5 1801 aa21.43■■□□□ 1.02
CCDC40-213ENST00000574933 A0A1W2PRG0 241 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 TESPA1A2RU30 521 aaPredicted RBP21.42■■□□□ 1.02
CCDC40-213ENST00000574933 USP17L10C9JJH3 530 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 PSMA5P28066 241 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 MCM5P33992 734 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 RBM25P49756 843 aaKnown RBP21.42■■□□□ 1.02
CCDC40-213ENST00000574933 GTF2A2P52657 109 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 RCSD1Q6JBY9 416 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 DGKHQ86XP1 1220 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 CLEC10AQ8IUN9 316 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 ACER1Q8TDN7 264 aa21.42■■□□□ 1.02
CCDC40-213ENST00000574933 WDR33Q9C0J8 1336 aaKnown RBP21.41■■□□□ 1.02
CCDC40-213ENST00000574933 A0A0G2JLL6 359 aaPredicted RBP21.41■■□□□ 1.02
CCDC40-213ENST00000574933 NMT2O60551 498 aa21.41■■□□□ 1.02
CCDC40-213ENST00000574933 VEGFBP49765 207 aa21.41■■□□□ 1.02
CCDC40-213ENST00000574933 EXOSC10Q01780 885 aaKnown RBP21.41■■□□□ 1.02
CCDC40-213ENST00000574933 SNAPC2Q13487 334 aa21.41■■□□□ 1.02
CCDC40-213ENST00000574933 COL9A3Q14050 684 aaPredicted RBP21.41■■□□□ 1.02
CCDC40-213ENST00000574933 SEC23AQ15436 765 aa21.41■■□□□ 1.02
CCDC40-213ENST00000574933 PRRT2Q7Z6L0 340 aaPredicted RBP21.41■■□□□ 1.02
CCDC40-213ENST00000574933 C12orf42Q96LP6 360 aa21.41■■□□□ 1.02
CCDC40-213ENST00000574933 ZSCAN10Q96SZ4 725 aaPredicted RBP21.41■■□□□ 1.02
CCDC40-213ENST00000574933 SH2D4AQ9H788 454 aa21.41■■□□□ 1.02
CCDC40-213ENST00000574933 RLFQ13129 1914 aa21.4■■□□□ 1.02
CCDC40-213ENST00000574933 MANSC4A6NHS7 340 aaPredicted RBP21.4■■□□□ 1.02
CCDC40-213ENST00000574933 TRIM75PA6NK02 468 aa21.4■■□□□ 1.02
CCDC40-213ENST00000574933 MAP2K2P36507 400 aa21.4■■□□□ 1.02
CCDC40-213ENST00000574933 USP14P54578 494 aa21.4■■□□□ 1.02
CCDC40-213ENST00000574933 MOGSQ13724 837 aa21.4■■□□□ 1.02
CCDC40-213ENST00000574933 PAXIP1Q6ZW49 1069 aaPredicted RBP21.4■■□□□ 1.02
CCDC40-213ENST00000574933 DHX32Q7L7V1 743 aaKnown RBP21.4■■□□□ 1.02
CCDC40-213ENST00000574933 REM2Q8IYK8 340 aaPredicted RBP21.4■■□□□ 1.02
CCDC40-213ENST00000574933 TMEM87BQ96K49 555 aa21.4■■□□□ 1.02
CCDC40-213ENST00000574933 JAKMIP1Q96N16 626 aaKnown RBP21.4■■□□□ 1.02
CCDC40-213ENST00000574933 UBAC1Q9BSL1 405 aa21.4■■□□□ 1.02
CCDC40-213ENST00000574933 C22orf23Q9BZE7 217 aa21.4■■□□□ 1.02
CCDC40-213ENST00000574933 UPF2Q9HAU5 1272 aaKnown RBP21.4■■□□□ 1.02
CCDC40-213ENST00000574933 TNKSO95271 1327 aa21.39■■□□□ 1.01
CCDC40-213ENST00000574933 CETPP11597 493 aa21.39■■□□□ 1.01
CCDC40-213ENST00000574933 INHBEP58166 350 aa21.39■■□□□ 1.01
CCDC40-213ENST00000574933 USP17L2Q6R6M4 530 aa21.39■■□□□ 1.01
CCDC40-213ENST00000574933 ENAHQ8N8S7 591 aaPredicted RBP21.39■■□□□ 1.01
CCDC40-213ENST00000574933 PROCA1Q8NCQ7 364 aaPredicted RBP21.39■■□□□ 1.01
CCDC40-213ENST00000574933 IGDCC4Q8TDY8 1250 aa21.39■■□□□ 1.01
CCDC40-213ENST00000574933 ZSWIM6Q9HCJ5 1215 aa21.39■■□□□ 1.01
CCDC40-213ENST00000574933 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.39■■□□□ 1.01
CCDC40-213ENST00000574933 CLIP2Q9UDT6 1046 aa21.39■■□□□ 1.01
CCDC40-213ENST00000574933 PRC1O43663 620 aa21.38■■□□□ 1.01
CCDC40-213ENST00000574933 TOP1P11387 765 aaKnown RBP21.38■■□□□ 1.01
CCDC40-213ENST00000574933 MTMR2Q13614 643 aa21.38■■□□□ 1.01
CCDC40-213ENST00000574933 SART3Q15020 963 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms