RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CDKL5O76039 1030 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 CTDNEP1O95476 244 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 SLURP2P0DP57 97 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 RXRAP19793 462 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 HMGN5P82970 282 aaKnown RBP15.98■□□□□ 0.15
CCDC40-209ENST00000573474 TROAPQ12815 778 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 RTN1Q16799 776 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 FANCBQ8NB91 859 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 NUP133Q8WUM0 1156 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 CEP95Q96GE4 821 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 TEPSINQ96N21 525 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 MTMR4Q9NYA4 1195 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 STX8Q9UNK0 236 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 SIPA1L1O43166 1804 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 PITPNM2Q9BZ72 1349 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 PTPDC1A2A3K4 754 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 JAK2O60674 1132 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 TOP1P11387 765 aaKnown RBP15.97■□□□□ 0.15
CCDC40-209ENST00000573474 PDIA4P13667 645 aaKnown RBP15.97■□□□□ 0.15
CCDC40-209ENST00000573474 PDCP20941 246 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 CDC27P30260 824 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 ADD1P35611 737 aaKnown RBP15.97■□□□□ 0.15
CCDC40-209ENST00000573474 ABCB5Q2M3G0 1257 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 CCDC144CPQ8IYA2 1237 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 PNMA1Q8ND90 353 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 MAP3K14Q99558 947 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 TMEM47Q9BQJ4 181 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 FAM217BQ9NTX9 383 aaPredicted RBP15.97■□□□□ 0.15
CCDC40-209ENST00000573474 RBM28Q9NW13 759 aaKnown RBP15.97■□□□□ 0.15
CCDC40-209ENST00000573474 KIF3AQ9Y496 699 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 PPP2R3BQ9Y5P8 575 aa15.97■□□□□ 0.15
CCDC40-209ENST00000573474 TTLL1O95922 423 aa15.96■□□□□ 0.15
CCDC40-209ENST00000573474 TMEM179Q6ZVK1 233 aa15.96■□□□□ 0.15
CCDC40-209ENST00000573474 USP50Q70EL3 339 aaPredicted RBP15.96■□□□□ 0.15
CCDC40-209ENST00000573474 CDAN1Q8IWY9 1227 aa15.96■□□□□ 0.15
CCDC40-209ENST00000573474 HOOK2Q96ED9 719 aa15.96■□□□□ 0.15
CCDC40-209ENST00000573474 KANSL2Q9H9L4 492 aa15.96■□□□□ 0.15
CCDC40-209ENST00000573474 CABP5Q9NP86 173 aa15.96■□□□□ 0.15
CCDC40-209ENST00000573474 GGA3Q9NZ52 723 aa15.96■□□□□ 0.15
CCDC40-209ENST00000573474 SCAF8Q9UPN6 1271 aaKnown RBP15.96■□□□□ 0.15
CCDC40-209ENST00000573474 SRCAPQ6ZRS2 3230 aa15.96■□□□□ 0.14
CCDC40-209ENST00000573474 DCAF8L1A6NGE4 600 aa15.95■□□□□ 0.14
CCDC40-209ENST00000573474 RAB3GAP1Q15042 981 aa15.95■□□□□ 0.14
CCDC40-209ENST00000573474 MIGA2Q7L4E1 593 aa15.95■□□□□ 0.14
CCDC40-209ENST00000573474 FAM184AQ8NB25 1140 aa15.95■□□□□ 0.14
CCDC40-209ENST00000573474 CTCFLQ8NI51 663 aaPredicted RBP15.95■□□□□ 0.14
CCDC40-209ENST00000573474 DDX11Q96FC9 970 aa15.95■□□□□ 0.14
CCDC40-209ENST00000573474 CLIP2Q9UDT6 1046 aa15.95■□□□□ 0.14
CCDC40-209ENST00000573474 IQCA1LA6NCM1 817 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 DTNBO60941 627 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 GDF11O95390 407 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 IFNAR1P17181 557 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 SYT1P21579 422 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 KIF5BP33176 963 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 EPHX2P34913 555 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 RRP1BQ14684 758 aaKnown RBP15.94■□□□□ 0.14
CCDC40-209ENST00000573474 NTRK3Q16288 839 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 LARP1BQ659C4 914 aaKnown RBP15.94■□□□□ 0.14
CCDC40-209ENST00000573474 MKL1Q969V6 931 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 DCPSQ96C86 337 aaKnown RBP15.94■□□□□ 0.14
CCDC40-209ENST00000573474 NYAP2Q9P242 653 aa15.94■□□□□ 0.14
CCDC40-209ENST00000573474 WDR33Q9C0J8 1336 aaKnown RBP15.94■□□□□ 0.14
CCDC40-209ENST00000573474 STX6O43752 255 aa15.93■□□□□ 0.14
CCDC40-209ENST00000573474 BRD1O95696 1058 aa15.93■□□□□ 0.14
CCDC40-209ENST00000573474 GH2P01242 217 aa15.93■□□□□ 0.14
CCDC40-209ENST00000573474 GUCY1A2P33402 732 aa15.93■□□□□ 0.14
CCDC40-209ENST00000573474 SSRP1Q08945 709 aaKnown RBP15.93■□□□□ 0.14
CCDC40-209ENST00000573474 GRM4Q14833 912 aa15.93■□□□□ 0.14
CCDC40-209ENST00000573474 SEPT2Q15019 361 aa15.93■□□□□ 0.14
CCDC40-209ENST00000573474 NBPF12Q5TAG4 269 aaPredicted RBP15.93■□□□□ 0.14
CCDC40-209ENST00000573474 DCAF15Q66K64 600 aa15.93■□□□□ 0.14
CCDC40-209ENST00000573474 ZC3H15Q8WU90 426 aaKnown RBP15.93■□□□□ 0.14
CCDC40-209ENST00000573474 ORC3Q9UBD5 711 aaPredicted RBP15.93■□□□□ 0.14
CCDC40-209ENST00000573474 MYH8P13535 1937 aa15.93■□□□□ 0.14
CCDC40-209ENST00000573474 FMNL1O95466 1100 aaPredicted RBP15.92■□□□□ 0.14
CCDC40-209ENST00000573474 FDPSP14324 419 aaKnown RBP15.92■□□□□ 0.14
CCDC40-209ENST00000573474 CAP2P40123 477 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 GNAQP50148 359 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 ICA1Q05084 483 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 PKP1Q13835 747 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 SUPT20HL1Q3ZLR7 823 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 TMTC3Q6ZXV5 915 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 TRIM22Q8IYM9 498 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 TAF1DQ9H5J8 278 aaPredicted RBP15.92■□□□□ 0.14
CCDC40-209ENST00000573474 GINM1Q9NU53 330 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 ZDHHC9Q9Y397 364 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 GREB1LQ9C091 1923 aaPredicted RBP15.92■□□□□ 0.14
CCDC40-209ENST00000573474 STK36Q9NRP7 1315 aa15.92■□□□□ 0.14
CCDC40-209ENST00000573474 PHF20L1A8MW92 1017 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 EEF2P13639 858 aaKnown RBP15.91■□□□□ 0.14
CCDC40-209ENST00000573474 JAG1P78504 1218 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 ATP2B2Q01814 1243 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 SHROOM1Q2M3G4 852 aaPredicted RBP15.91■□□□□ 0.14
CCDC40-209ENST00000573474 NBPF11Q86T75 865 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 PNMA8AQ86V59 439 aaPredicted RBP15.91■□□□□ 0.14
CCDC40-209ENST00000573474 CLEC10AQ8IUN9 316 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 SULF1Q8IWU6 871 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 WASF1Q92558 559 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 PHKBQ93100 1093 aa15.91■□□□□ 0.14
CCDC40-209ENST00000573474 LZTS2Q9BRK4 669 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms