RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 ZBED9Q6R2W3 1325 aa5.22□□□□□ -1.57
VPS39-212ENST00000570023 PRAMEF27A3QJZ7 478 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 LEFTY1O75610 366 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 GARTP22102 1010 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 NBPF6Q5VWK0 638 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 BNC2Q6ZN30 1099 aaPredicted RBP5.21□□□□□ -1.58
VPS39-212ENST00000570023 NBPF5PQ86XG9 351 aaPredicted RBP5.21□□□□□ -1.58
VPS39-212ENST00000570023 HID1Q8IV36 788 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 JARID2Q92833 1246 aaPredicted RBP5.21□□□□□ -1.58
VPS39-212ENST00000570023 MKL1Q969V6 931 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 NBPF4Q96M43 638 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 MYCBPQ99417 103 aaPredicted RBP5.21□□□□□ -1.58
VPS39-212ENST00000570023 BACH2Q9BYV9 841 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 FBRSQ9HAH7 460 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 MKNK2Q9HBH9 465 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 CWC22Q9HCG8 908 aaKnown RBP5.21□□□□□ -1.58
VPS39-212ENST00000570023 COPRSQ9NQ92 184 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 KBTBD4Q9NVX7 518 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 CEP83Q9Y592 693 aa5.21□□□□□ -1.58
VPS39-212ENST00000570023 PHLDB1Q86UU1 1377 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 ROBO2Q9HCK4 1378 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 NINLQ9Y2I6 1382 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 F6X3S4 739 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 TULP2O00295 520 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 IGF2BP3O00425 579 aaKnown RBP eCLIP5.2□□□□□ -1.58
VPS39-212ENST00000570023 KIF1CO43896 1103 aaKnown RBP5.2□□□□□ -1.58
VPS39-212ENST00000570023 GREM1O60565 184 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 ADAMTS4O75173 837 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 LRIG2O94898 1065 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 F13A1P00488 732 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 GRK4P32298 578 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 ETF1P62495 437 aaKnown RBP5.2□□□□□ -1.58
VPS39-212ENST00000570023 NKG7Q16617 165 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 ARMCX6Q7L4S7 300 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 HS2ST1Q7LGA3 356 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 CREBRFQ8IUR6 639 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 MNS1Q8NEH6 495 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 FOXQ1Q9C009 403 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 ZC3H7BQ9UGR2 993 aaKnown RBP5.2□□□□□ -1.58
VPS39-212ENST00000570023 KIF3AQ9Y496 699 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 PRR36Q9H6K5 1346 aa5.2□□□□□ -1.58
VPS39-212ENST00000570023 GOLIM4O00461 696 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 CST3P01034 146 aaPredicted RBP5.19□□□□□ -1.58
VPS39-212ENST00000570023 CCDC172P0C7W6 258 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 HS1BP3Q53T59 392 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 FBXL19Q6PCT2 694 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 FAM196AQ6ZSG2 479 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 MRPL41Q8IXM3 137 aaKnown RBP5.19□□□□□ -1.58
VPS39-212ENST00000570023 TOP6BLQ8N6T0 577 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 MFSD2AQ8NA29 543 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 TMEM87AQ8NBN3 555 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 ZNF526Q8TF50 670 aaPredicted RBP5.19□□□□□ -1.58
VPS39-212ENST00000570023 HEXIM2Q96MH2 286 aaKnown RBP5.19□□□□□ -1.58
VPS39-212ENST00000570023 TIGD1Q96MW7 591 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 MYH16Q9H6N6 1097 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 LRRC4CQ9HCJ2 640 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 BRMS1Q9HCU9 246 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 METTL5Q9NRN9 209 aaKnown RBP5.19□□□□□ -1.58
VPS39-212ENST00000570023 GGT7Q9UJ14 662 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 ADAM30Q9UKF2 790 aa5.19□□□□□ -1.58
VPS39-212ENST00000570023 MINDY4BA8MYZ0 360 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 ZNF500O60304 480 aaPredicted RBP5.18□□□□□ -1.58
VPS39-212ENST00000570023 BPNT1O95861 308 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 EOMESO95936 686 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 XRCC6P12956 609 aaKnown RBP eCLIP5.18□□□□□ -1.58
VPS39-212ENST00000570023 EIF4A3P38919 411 aaKnown RBP5.18□□□□□ -1.58
VPS39-212ENST00000570023 OXCT1P55809 520 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 FANCCQ00597 558 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 GABPB1Q06547 395 aaPredicted RBP5.18□□□□□ -1.58
VPS39-212ENST00000570023 PDE4BQ07343 736 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 TMEM201Q5SNT2 666 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 TSHZ1Q6ZSZ6 1077 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 MCATQ8IVS2 390 aaKnown RBP5.18□□□□□ -1.58
VPS39-212ENST00000570023 NGEFQ8N5V2 710 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 GOLM1Q8NBJ4 401 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 FAM210AQ96ND0 272 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 NCAPGQ9BPX3 1015 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 LRRC3Q9BY71 257 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 SMC4Q9NTJ3 1288 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 TJP2Q9UDY2 1190 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 CCDC39Q9UFE4 941 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 RAD50Q92878 1312 aa5.18□□□□□ -1.58
VPS39-212ENST00000570023 E9PSI1 815 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 SLITRK5O94991 958 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 WNT11O96014 354 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 PGRP06401 933 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 ZNF76P36508 570 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 FAM160A1Q05DH4 1040 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 HDAC1Q13547 482 aaPredicted RBP5.17□□□□□ -1.58
VPS39-212ENST00000570023 MPP2Q14168 576 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 SNAP47Q5SQN1 464 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 SLC6A19Q695T7 634 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 NFXL1Q6ZNB6 911 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 EXOC8Q8IYI6 725 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 TMTC2Q8N394 836 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 NETO1Q8TDF5 533 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 ZNF296Q8WUU4 475 aaPredicted RBP5.17□□□□□ -1.58
VPS39-212ENST00000570023 ACSF2Q96CM8 615 aaPredicted RBP5.17□□□□□ -1.58
VPS39-212ENST00000570023 TMEM87BQ96K49 555 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 CALCOCO1Q9P1Z2 691 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms