RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TTC14Q96N46 770 aa24.27■■□□□ 1.48
CLN3-212ENST00000564574 SNCAIPQ9Y6H5 919 aa24.27■■□□□ 1.48
CLN3-212ENST00000564574 TNKSO95271 1327 aa24.27■■□□□ 1.48
CLN3-212ENST00000564574 UBE2Q2LH0YL09 131 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 IFIT3O14879 490 aaKnown RBP24.26■■□□□ 1.47
CLN3-212ENST00000564574 NOVP48745 357 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 RAB3GAP1Q15042 981 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 FBXL16Q8N461 479 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 CEP95Q96GE4 821 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 UPF3BQ9BZI7 483 aaKnown RBP24.26■■□□□ 1.47
CLN3-212ENST00000564574 ALDH8A1Q9H2A2 487 aaPredicted RBP24.26■■□□□ 1.47
CLN3-212ENST00000564574 AS3MTQ9HBK9 375 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 IL17RBQ9NRM6 502 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 MTMR4Q9NYA4 1195 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 NYAP2Q9P242 653 aa24.26■■□□□ 1.47
CLN3-212ENST00000564574 USP17L5A8MUK1 530 aa24.25■■□□□ 1.47
CLN3-212ENST00000564574 CPA1P15085 419 aa24.25■■□□□ 1.47
CLN3-212ENST00000564574 ICA1Q05084 483 aa24.25■■□□□ 1.47
CLN3-212ENST00000564574 COL9A3Q14050 684 aaPredicted RBP24.25■■□□□ 1.47
CLN3-212ENST00000564574 SHROOM1Q2M3G4 852 aaPredicted RBP24.25■■□□□ 1.47
CLN3-212ENST00000564574 CHST3Q7LGC8 479 aa24.25■■□□□ 1.47
CLN3-212ENST00000564574 ANKS1AQ92625 1134 aa24.25■■□□□ 1.47
CLN3-212ENST00000564574 ZKSCAN3Q9BRR0 538 aa24.25■■□□□ 1.47
CLN3-212ENST00000564574 PDRG1Q9NUG6 133 aa24.25■■□□□ 1.47
CLN3-212ENST00000564574 TMEM88BA6NKF7 163 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 SH2B2O14492 632 aaPredicted RBP24.24■■□□□ 1.47
CLN3-212ENST00000564574 TTLL1O95922 423 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 PTPRAP18433 802 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 LIFRP42702 1097 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 NEK4P51957 841 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 WTAPQ15007 396 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 SEC23AQ15436 765 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 TMEM67Q5HYA8 995 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 TMTC2Q8N394 836 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 IGDCC4Q8TDY8 1250 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 ARHGEF10LQ9HCE6 1279 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 SYNPO2Q9UMS6 1093 aa24.24■■□□□ 1.47
CLN3-212ENST00000564574 NMT2O60551 498 aa24.23■■□□□ 1.47
CLN3-212ENST00000564574 FGD1P98174 961 aa24.23■■□□□ 1.47
CLN3-212ENST00000564574 ERO1BQ86YB8 467 aa24.23■■□□□ 1.47
CLN3-212ENST00000564574 DNAJC5GQ8N7S2 189 aa24.23■■□□□ 1.47
CLN3-212ENST00000564574 ENAHQ8N8S7 591 aaPredicted RBP24.23■■□□□ 1.47
CLN3-212ENST00000564574 WDR18Q9BV38 432 aa24.23■■□□□ 1.47
CLN3-212ENST00000564574 AGXT2Q9BYV1 514 aa24.23■■□□□ 1.47
CLN3-212ENST00000564574 STX8Q9UNK0 236 aa24.23■■□□□ 1.47
CLN3-212ENST00000564574 SPDYE5A6NIY4 337 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 HUNKP57058 714 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 PPATQ06203 517 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 ANKRD1Q15327 319 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 IFIT1BQ5T764 474 aaKnown RBP24.22■■□□□ 1.47
CLN3-212ENST00000564574 RCSD1Q6JBY9 416 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 Q6ZUG5 572 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 MKL1Q969V6 931 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 SLC10A4Q96EP9 437 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 TCEANC2Q96MN5 208 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 SH2D4AQ9H788 454 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 ELP3Q9H9T3 547 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 TLL2Q9Y6L7 1015 aa24.22■■□□□ 1.47
CLN3-212ENST00000564574 TOP1P11387 765 aaKnown RBP24.21■■□□□ 1.47
CLN3-212ENST00000564574 EEF2P13639 858 aaKnown RBP24.21■■□□□ 1.47
CLN3-212ENST00000564574 HTRA3P83110 453 aa24.21■■□□□ 1.47
CLN3-212ENST00000564574 SAPCD2Q86UD0 394 aa24.21■■□□□ 1.47
CLN3-212ENST00000564574 CLMNQ96JQ2 1002 aa24.21■■□□□ 1.47
CLN3-212ENST00000564574 LRRC2Q9BYS8 371 aa24.21■■□□□ 1.47
CLN3-212ENST00000564574 LY9Q9HBG7 655 aa24.21■■□□□ 1.47
CLN3-212ENST00000564574 CLIP2Q9UDT6 1046 aa24.21■■□□□ 1.47
CLN3-212ENST00000564574 ST18O60284 1047 aa24.2■■□□□ 1.46
CLN3-212ENST00000564574 SGMS1Q86VZ5 419 aa24.2■■□□□ 1.46
CLN3-212ENST00000564574 HHIPL1Q96JK4 782 aa24.2■■□□□ 1.46
CLN3-212ENST00000564574 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.2■■□□□ 1.46
CLN3-212ENST00000564574 ZHX2Q9Y6X8 837 aa24.2■■□□□ 1.46
CLN3-212ENST00000564574 PTPRFP10586 1907 aa24.2■■□□□ 1.46
CLN3-212ENST00000564574 PPIL2Q13356 520 aa24.19■■□□□ 1.46
CLN3-212ENST00000564574 CLEC10AQ8IUN9 316 aa24.19■■□□□ 1.46
CLN3-212ENST00000564574 SIAH1Q8IUQ4 282 aa24.19■■□□□ 1.46
CLN3-212ENST00000564574 ZNF280CQ8ND82 737 aa24.19■■□□□ 1.46
CLN3-212ENST00000564574 TMEM47Q9BQJ4 181 aa24.19■■□□□ 1.46
CLN3-212ENST00000564574 KAT14Q9H8E8 782 aa24.19■■□□□ 1.46
CLN3-212ENST00000564574 TMX2Q9Y320 296 aa24.19■■□□□ 1.46
CLN3-212ENST00000564574 CCDC69A6NI79 296 aa24.18■■□□□ 1.46
CLN3-212ENST00000564574 ATP2B2Q01814 1243 aa24.18■■□□□ 1.46
CLN3-212ENST00000564574 TOB2Q14106 344 aaPredicted RBP24.18■■□□□ 1.46
CLN3-212ENST00000564574 BRF1Q92994 677 aa24.18■■□□□ 1.46
CLN3-212ENST00000564574 OPTNQ96CV9 577 aa24.18■■□□□ 1.46
CLN3-212ENST00000564574 AFG3L2Q9Y4W6 797 aa24.18■■□□□ 1.46
CLN3-212ENST00000564574 USP14P54578 494 aa24.17■■□□□ 1.46
CLN3-212ENST00000564574 AK2P54819 239 aa24.17■■□□□ 1.46
CLN3-212ENST00000564574 RGMBQ6NW40 437 aa24.17■■□□□ 1.46
CLN3-212ENST00000564574 NFXL1Q6ZNB6 911 aa24.17■■□□□ 1.46
CLN3-212ENST00000564574 CCDC84Q86UT8 332 aaPredicted RBP24.17■■□□□ 1.46
CLN3-212ENST00000564574 KIAA1683Q9H0B3 1180 aa24.17■■□□□ 1.46
CLN3-212ENST00000564574 GPHNQ9NQX3 736 aaPredicted RBP24.17■■□□□ 1.46
CLN3-212ENST00000564574 CREBZFQ9NS37 354 aa24.17■■□□□ 1.46
CLN3-212ENST00000564574 ABT1Q9ULW3 272 aaKnown RBP24.17■■□□□ 1.46
CLN3-212ENST00000564574 A0A1W2PRG0 241 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 C19orf81C9J6K1 198 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 USP17L10C9JJH3 530 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 CXCL11O14625 94 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 EVCP57679 992 aa24.16■■□□□ 1.46
CLN3-212ENST00000564574 PNMA1Q8ND90 353 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms