RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 TMEM67Q5HYA8 995 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 MRM1Q6IN84 353 aaKnown RBP6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 CNNM4Q6P4Q7 775 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 GET4Q7L5D6 327 aaPredicted RBP6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 SKAP1Q86WV1 359 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 PASD1Q8IV76 773 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 SUGP1Q8IWZ8 645 aaKnown RBP6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 AFAP1Q8N556 730 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 GLIS3Q8NEA6 775 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 FBXO41Q8TF61 875 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 ZDHHC1Q8WTX9 485 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 JPH3Q8WXH2 748 aaPredicted RBP6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 FERD3LQ96RJ6 166 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 CRBNQ96SW2 442 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 RHOBTB2Q9BYZ6 727 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 GPAMQ9HCL2 828 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 BCS1LQ9Y276 419 aa6.4□□□□□ -1.38
VPS35P1-201ENST00000563400 SERTM1A2A2V5 107 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 NBNO60934 754 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 ZSCAN20P17040 1043 aaPredicted RBP6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 TATP17735 454 aaPredicted RBP6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 RRM1P23921 792 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 MCM4P33991 863 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 HTR3AP46098 478 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 STRN3Q13033 797 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 PICALMQ13492 652 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 LONRF1Q17RB8 773 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 CCDC93Q567U6 631 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 ZKSCAN2Q63HK3 967 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 C6orf15Q6UXA7 325 aaPredicted RBP6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 CCDC141Q6ZP82 1450 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 ZBTB46Q86UZ6 589 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 TPH2Q8IWU9 490 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 CCDC89Q8N998 374 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 PJA1Q8NG27 643 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 GTPBP3Q969Y2 492 aaKnown RBP6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 AIDAQ96BJ3 306 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 CHMP4CQ96CF2 233 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 CLUHP3Q96NS8 147 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 MUC3BQ9H195 1237 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 C9orf78Q9NZ63 289 aaPredicted RBP6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 ZNF69Q9UC07 566 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 MLH3Q9UHC1 1453 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 MAPRE3Q9UPY8 281 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 USP20Q9Y2K6 914 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 CHMP3Q9Y3E7 222 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 IPPQ9Y573 584 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 CTDP1Q9Y5B0 961 aaPredicted RBP6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 PARP3Q9Y6F1 533 aa6.4□□□□□ -1.39
VPS35P1-201ENST00000563400 TSPOAP1O95153 1857 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 ATP10AO60312 1499 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 FGD6Q6ZV73 1430 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 TMEM238LA0A1B0GVL6 79 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 RASSF10A6NK89 507 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 APAF1O14727 1248 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 TERF1P54274 439 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 GEMIN4P57678 1058 aaKnown RBP6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 SRSF11Q05519 484 aaKnown RBP6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 FIGNL1Q6PIW4 674 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 ENAHQ8N8S7 591 aaPredicted RBP6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 WDR66Q8TBY9 1149 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 SNX29Q8TEQ0 813 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 STRBPQ96SI9 672 aaKnown RBP6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 SARGQ9BW04 601 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 SUV39H2Q9H5I1 410 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 MBIPQ9NS73 344 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 CABP1Q9NZU7 370 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 ZNF232Q9UNY5 417 aa6.39□□□□□ -1.39
VPS35P1-201ENST00000563400 E2F8A0AVK6 867 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 PRRT4C9JH25 899 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 ADCY3O60266 1144 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 PHACTR2O75167 634 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 ABLIM3O94929 683 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 MSX1P28360 303 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 L1CAMP32004 1257 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 SARSP49591 514 aaKnown RBP6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 LIG3P49916 1009 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 FCGRTP55899 365 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 RNFT1Q5M7Z0 435 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 FOXB2Q5VYV0 432 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 RUFY4Q6ZNE9 571 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 FAM196AQ6ZSG2 479 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 LSRQ86X29 649 aaPredicted RBP6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 TTC30BQ8N4P2 665 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 ST13P5Q8NFI4 369 aaPredicted RBP6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 LEO1Q8WVC0 666 aaPredicted RBP6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 PHACTR1Q9C0D0 580 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 OSGEPQ9NPF4 335 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 ATG3Q9NT62 314 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 TMEM63CQ9P1W3 806 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 GTF2A1LQ9UNN4 478 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 FAM50BQ9Y247 325 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 KIF13AQ9H1H9 1805 aa6.38□□□□□ -1.39
VPS35P1-201ENST00000563400 C9orf84Q5VXU9 1444 aa6.37□□□□□ -1.39
VPS35P1-201ENST00000563400 CNTLNQ9NXG0 1405 aa6.37□□□□□ -1.39
VPS35P1-201ENST00000563400 ROCK1Q13464 1354 aa6.37□□□□□ -1.39
VPS35P1-201ENST00000563400 TNKSO95271 1327 aa6.37□□□□□ -1.39
VPS35P1-201ENST00000563400 GABRDO14764 452 aa6.37□□□□□ -1.39
VPS35P1-201ENST00000563400 RFPL1O75677 317 aa6.37□□□□□ -1.39
VPS35P1-201ENST00000563400 RFPL3O75679 317 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms