RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 Q6ZUG5 572 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 ARMC9Q7Z3E5 817 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 CCDC84Q86UT8 332 aaPredicted RBP19.52■□□□□ 0.72
VPS4A-202ENST00000562754 IQCA1Q86XH1 822 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 TMEM87BQ96K49 555 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 MTA3Q9BTC8 594 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 AGXT2Q9BYV1 514 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 LY9Q9HBG7 655 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 GBA2Q9HCG7 927 aaPredicted RBP19.52■□□□□ 0.72
VPS4A-202ENST00000562754 CABP5Q9NP86 173 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 SNCAIPQ9Y6H5 919 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 CD2BP2O95400 341 aaKnown RBP19.51■□□□□ 0.71
VPS4A-202ENST00000562754 ASNSP08243 561 aa19.51■□□□□ 0.71
VPS4A-202ENST00000562754 NOVP48745 357 aa19.51■□□□□ 0.71
VPS4A-202ENST00000562754 AK2P54819 239 aa19.51■□□□□ 0.71
VPS4A-202ENST00000562754 RAB3GAP1Q15042 981 aa19.51■□□□□ 0.71
VPS4A-202ENST00000562754 CLMNQ96JQ2 1002 aa19.51■□□□□ 0.71
VPS4A-202ENST00000562754 GINM1Q9NU53 330 aa19.51■□□□□ 0.71
VPS4A-202ENST00000562754 MTMR4Q9NYA4 1195 aa19.51■□□□□ 0.71
VPS4A-202ENST00000562754 UBE2Q2LH0YL09 131 aa19.5■□□□□ 0.71
VPS4A-202ENST00000562754 FKBP1BP68106 108 aa19.5■□□□□ 0.71
VPS4A-202ENST00000562754 ICA1Q05084 483 aa19.5■□□□□ 0.71
VPS4A-202ENST00000562754 SART3Q15020 963 aaKnown RBP19.5■□□□□ 0.71
VPS4A-202ENST00000562754 LDLRAD1Q5T700 205 aa19.5■□□□□ 0.71
VPS4A-202ENST00000562754 SIAH1Q8IUQ4 282 aa19.5■□□□□ 0.71
VPS4A-202ENST00000562754 FBXL16Q8N461 479 aa19.5■□□□□ 0.71
VPS4A-202ENST00000562754 ALDH8A1Q9H2A2 487 aaPredicted RBP19.5■□□□□ 0.71
VPS4A-202ENST00000562754 FSTL1Q12841 308 aa19.49■□□□□ 0.71
VPS4A-202ENST00000562754 WTAPQ15007 396 aa19.49■□□□□ 0.71
VPS4A-202ENST00000562754 ANKRD13AQ8IZ07 590 aa19.49■□□□□ 0.71
VPS4A-202ENST00000562754 ANKS1AQ92625 1134 aa19.49■□□□□ 0.71
VPS4A-202ENST00000562754 BRF1Q92994 677 aa19.49■□□□□ 0.71
VPS4A-202ENST00000562754 KANSL2Q9H9L4 492 aa19.49■□□□□ 0.71
VPS4A-202ENST00000562754 ERICH2A1L162 156 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 EEF2P13639 858 aaKnown RBP19.48■□□□□ 0.71
VPS4A-202ENST00000562754 PTPRAP18433 802 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 LIFRP42702 1097 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 CCDC178Q5BJE1 867 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 NOL8Q76FK4 1167 aaKnown RBP19.48■□□□□ 0.71
VPS4A-202ENST00000562754 DGKHQ86XP1 1220 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 C2orf69Q8N8R5 385 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 LARP6Q9BRS8 491 aaKnown RBP19.48■□□□□ 0.71
VPS4A-202ENST00000562754 PICK1Q9NRD5 415 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 NYAP2Q9P242 653 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 STX8Q9UNK0 236 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 CSADQ9Y600 493 aa19.48■□□□□ 0.71
VPS4A-202ENST00000562754 PTPRFP10586 1907 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 A0A1W2PRG0 241 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 USP17L5A8MUK1 530 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 ST18O60284 1047 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 TTLL1O95922 423 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 FGD1P98174 961 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 APOBRQ0VD83 1088 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 IFIT1BQ5T764 474 aaKnown RBP19.47■□□□□ 0.71
VPS4A-202ENST00000562754 SGMS1Q86VZ5 419 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 LRRC47Q8N1G4 583 aaKnown RBP19.47■□□□□ 0.71
VPS4A-202ENST00000562754 ACER1Q8TDN7 264 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 CNKSR2Q8WXI2 1034 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 TMEM47Q9BQJ4 181 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 ELP3Q9H9T3 547 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 BRPF3Q9ULD4 1205 aa19.47■□□□□ 0.71
VPS4A-202ENST00000562754 TOP1P11387 765 aaKnown RBP19.46■□□□□ 0.71
VPS4A-202ENST00000562754 ATP2B2Q01814 1243 aa19.46■□□□□ 0.71
VPS4A-202ENST00000562754 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.46■□□□□ 0.71
VPS4A-202ENST00000562754 CLIP2Q9UDT6 1046 aa19.46■□□□□ 0.71
VPS4A-202ENST00000562754 KLF18A0A0U1RQI7 1052 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 SPDYE5A6NIY4 337 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 LARGE1O95461 756 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 ECE1P42892 770 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 EVCP57679 992 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 PPP4R3BQ5MIZ7 849 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 RASGRP2Q7LDG7 609 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 IL27Q8NEV9 243 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 MKL1Q969V6 931 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 TPCN1Q9ULQ1 816 aa19.45■□□□□ 0.7
VPS4A-202ENST00000562754 UNCXA6NJT0 531 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 ANKRD1Q15327 319 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 APOA5Q6Q788 366 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 NFXL1Q6ZNB6 911 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 RAB11FIP4Q86YS3 637 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 ZNF654Q8IZM8 581 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 PNMA1Q8ND90 353 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 MYL10Q9BUA6 226 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 WDR18Q9BV38 432 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 KAT14Q9H8E8 782 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 ARHGEF10LQ9HCE6 1279 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 ZHX2Q9Y6X8 837 aa19.44■□□□□ 0.7
VPS4A-202ENST00000562754 CCDC69A6NI79 296 aa19.43■□□□□ 0.7
VPS4A-202ENST00000562754 GJA5P36382 358 aa19.43■□□□□ 0.7
VPS4A-202ENST00000562754 HUNKP57058 714 aa19.43■□□□□ 0.7
VPS4A-202ENST00000562754 ERO1BQ86YB8 467 aa19.43■□□□□ 0.7
VPS4A-202ENST00000562754 TMTC2Q8N394 836 aa19.43■□□□□ 0.7
VPS4A-202ENST00000562754 SNX21Q969T3 373 aa19.43■□□□□ 0.7
VPS4A-202ENST00000562754 HPS5Q9UPZ3 1129 aa19.43■□□□□ 0.7
VPS4A-202ENST00000562754 TMX2Q9Y320 296 aa19.43■□□□□ 0.7
VPS4A-202ENST00000562754 RBM19Q9Y4C8 960 aaKnown RBP19.43■□□□□ 0.7
VPS4A-202ENST00000562754 LOC285556D6RIA3 1793 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 GOLGA8BA8MQT2 603 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 SPP2Q13103 211 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 KIAA1755Q5JYT7 1200 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms