RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 HUNKP57058 714 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 MMRN2Q9H8L6 949 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 ELP3Q9H9T3 547 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 TPCN1Q9ULQ1 816 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 BMP3P12645 472 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 ADCY7P51828 1080 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 MAP3K11Q16584 847 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 DTHD1Q6ZMT9 781 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 REXO1Q8N1G1 1221 aaKnown RBP10.53□□□□□ -0.72
VPS39-205ENST00000562258 NLGN2Q8NFZ4 835 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 RTEL1Q9NZ71 1219 aa10.53□□□□□ -0.72
VPS39-205ENST00000562258 TBCAO75347 108 aaKnown RBP10.52□□□□□ -0.72
VPS39-205ENST00000562258 STAT6P42226 847 aa10.52□□□□□ -0.72
VPS39-205ENST00000562258 SYKP43405 635 aa10.52□□□□□ -0.72
VPS39-205ENST00000562258 NBPF9Q3BBW0 867 aa10.52□□□□□ -0.72
VPS39-205ENST00000562258 FILIP1Q7Z7B0 1213 aa10.52□□□□□ -0.72
VPS39-205ENST00000562258 COA7Q96BR5 231 aa10.52□□□□□ -0.72
VPS39-205ENST00000562258 PSTPIP2Q9H939 334 aa10.52□□□□□ -0.72
VPS39-205ENST00000562258 MED1Q15648 1581 aaPredicted RBP10.52□□□□□ -0.73
VPS39-205ENST00000562258 SPTLC2O15270 562 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 KCTD2Q14681 263 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 RASGRP4Q8TDF6 673 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 PGBD1Q96JS3 809 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 CAMKK2Q96RR4 588 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 TSPY26PQ9H489 355 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 MYOZ2Q9NPC6 264 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 SEPT11Q9NVA2 429 aaKnown RBP10.52□□□□□ -0.73
VPS39-205ENST00000562258 FMNL1O95466 1100 aaPredicted RBP10.52□□□□□ -0.73
VPS39-205ENST00000562258 F13A1P00488 732 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 FBXO33Q7Z6M2 555 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 GLG1Q92896 1179 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 SWAP70Q9UH65 585 aa10.52□□□□□ -0.73
VPS39-205ENST00000562258 CDC42EP5Q6NZY7 148 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 DHX37Q8IY37 1157 aaKnown RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 NAP1L5Q96NT1 182 aaPredicted RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 PLEKHG2Q9H7P9 1386 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 BCL9LQ86UU0 1499 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 UBE2Q2LH0YL09 131 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 HARSP12081 509 aaKnown RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 HMGCS2P54868 508 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 NFIAQ12857 509 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 APOA5Q6Q788 366 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 TDRD7Q8NHU6 1098 aaKnown RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 RRAGCQ9HB90 399 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 CD2APQ9Y5K6 639 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 GSG1L2A8MUP6 293 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 CELF2O95319 508 aaKnown RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 ZNF157P51786 506 aaPredicted RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 ASIC1P78348 528 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 ARHGEF16Q5VV41 709 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 STAMQ92783 540 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 FAM212AQ96EL1 285 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 ROBO1Q9Y6N7 1651 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 BTBD18B2RXH4 712 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 VEGFAP15692 232 aaPredicted RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 NASPP49321 788 aaPredicted RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 BRDTQ58F21 947 aaPredicted RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 APOBEC3FQ8IUX4 373 aaKnown RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 CEP95Q96GE4 821 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 PRM3Q9NNZ6 103 aa10.51□□□□□ -0.73
VPS39-205ENST00000562258 ZNF70Q9UC06 446 aaPredicted RBP10.51□□□□□ -0.73
VPS39-205ENST00000562258 NONOQ15233 471 aaKnown RBP eCLIP10.5□□□□□ -0.73
VPS39-205ENST00000562258 SYCP1Q15431 976 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 INF2Q27J81 1249 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 NCAPH2Q6IBW4 605 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 PAF1Q8N7H5 531 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 TTC16Q8NEE8 873 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 PIGSQ96S52 555 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 RGPD8O14715 1765 aaPredicted RBP10.5□□□□□ -0.73
VPS39-205ENST00000562258 PHLPP1O60346 1717 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 AKR1B1P15121 316 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 ODF2Q5BJF6 829 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 RRAGBQ5VZM2 374 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 TBC1D10CQ8IV04 446 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 A0A1B0GVL5 298 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 EEF2P13639 858 aaKnown RBP10.5□□□□□ -0.73
VPS39-205ENST00000562258 PDIA3P30101 505 aaKnown RBP10.5□□□□□ -0.73
VPS39-205ENST00000562258 PRR16Q569H4 304 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 FAM83BQ5T0W9 1011 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 GIMAP6Q6P9H5 292 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 AMIGO3Q86WK7 504 aa10.5□□□□□ -0.73
VPS39-205ENST00000562258 COL3A1P02461 1466 aaPredicted RBP10.49□□□□□ -0.73
VPS39-205ENST00000562258 PLCD1P51178 756 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 AMPD3Q01432 767 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 CTR9Q6PD62 1173 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 TMEM179Q6ZVK1 233 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 AMNQ9BXJ7 453 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 MLXIPQ9HAP2 919 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 DACT1Q9NYF0 836 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 SPDYE4A6NLX3 237 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 STAT2P52630 851 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 AIFM3Q96NN9 605 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 ZSWIM6Q9HCJ5 1215 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 DACH1Q9UI36 760 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 FZD1Q9UP38 647 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 USP17L10C9JJH3 530 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 TM4SF1P30408 202 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 HOXA13P31271 388 aaPredicted RBP10.49□□□□□ -0.73
VPS39-205ENST00000562258 EPHX2P34913 555 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 AKT1S1Q96B36 256 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms