RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NBPF3Q9H094 633 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 ELP3Q9H9T3 547 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 ZSWIM5Q9P217 1185 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 PTPRFP10586 1907 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 SPDYE5A6NIY4 337 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 C19orf81C9J6K1 198 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 CXCL11O14625 94 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 TTLL1O95922 423 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 ZBTB48P10074 688 aaPredicted RBP10.86□□□□□ -0.67
LDLR-210ENST00000559340 PTPRAP18433 802 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 USP14P54578 494 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 FGD1P98174 961 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 EVX2Q03828 476 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 ICA1Q05084 483 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 PPIL2Q13356 520 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 SEPT2Q15019 361 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 FAM47AQ5JRC9 791 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 MOB2Q70IA6 237 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 DHX32Q7L7V1 743 aaKnown RBP10.86□□□□□ -0.67
LDLR-210ENST00000559340 DGKHQ86XP1 1220 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 REM2Q8IYK8 340 aaPredicted RBP10.86□□□□□ -0.67
LDLR-210ENST00000559340 RASEFQ8IZ41 740 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 JAKMIP1Q96N16 626 aaKnown RBP10.86□□□□□ -0.67
LDLR-210ENST00000559340 INCENPQ9NQS7 918 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.86□□□□□ -0.67
LDLR-210ENST00000559340 NYAP2Q9P242 653 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 SYNPO2Q9UMS6 1093 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 FZD1Q9UP38 647 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 CYP46A1Q9Y6A2 500 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 SNCAIPQ9Y6H5 919 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 ZHX2Q9Y6X8 837 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 PLIN4Q96Q06 1357 aa10.86□□□□□ -0.67
LDLR-210ENST00000559340 NEDD4P46934 1319 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 USP17L10C9JJH3 530 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 SMIM22K7EJ46 135 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 IFIT3O14879 490 aaKnown RBP10.85□□□□□ -0.67
LDLR-210ENST00000559340 SLURP2P0DP57 97 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 RBM25P49756 843 aaKnown RBP10.85□□□□□ -0.67
LDLR-210ENST00000559340 INHBEP58166 350 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 ATP2B2Q01814 1243 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 RRP1BQ14684 758 aaKnown RBP10.85□□□□□ -0.67
LDLR-210ENST00000559340 USP17L2Q6R6M4 530 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 PAXIP1Q6ZW49 1069 aaPredicted RBP10.85□□□□□ -0.67
LDLR-210ENST00000559340 MB21D2Q8IYB1 491 aaPredicted RBP10.85□□□□□ -0.67
LDLR-210ENST00000559340 ZNF280CQ8ND82 737 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 OPTNQ96CV9 577 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 WNK4Q96J92 1243 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 ZSCAN10Q96SZ4 725 aaPredicted RBP10.85□□□□□ -0.67
LDLR-210ENST00000559340 FEZ1Q99689 392 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 GOPCQ9HD26 462 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 MTMR4Q9NYA4 1195 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 TMOD4Q9NZQ9 345 aa10.85□□□□□ -0.67
LDLR-210ENST00000559340 WDR33Q9C0J8 1336 aaKnown RBP10.84□□□□□ -0.67
LDLR-210ENST00000559340 IGKV6D-41A0A0C4DH26 115 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 PRC1O43663 620 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 TOP1P11387 765 aaKnown RBP10.84□□□□□ -0.67
LDLR-210ENST00000559340 CASTP20810 708 aaKnown RBP10.84□□□□□ -0.67
LDLR-210ENST00000559340 GTF2A2P52657 109 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 LBX1P52954 281 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 SPP2Q13103 211 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 SNAPC2Q13487 334 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 WTAPQ15007 396 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 IFIT1BQ5T764 474 aaKnown RBP10.84□□□□□ -0.67
LDLR-210ENST00000559340 SPRYD7Q5W111 196 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 SYNE3Q6ZMZ3 975 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 STOX1Q6ZVD7 989 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 RUFY3Q7L099 469 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 FASTKD5Q7L8L6 764 aaKnown RBP10.84□□□□□ -0.67
LDLR-210ENST00000559340 ANKS1AQ92625 1134 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 MKL1Q969V6 931 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 IL17RAQ96F46 866 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 OTUD5Q96G74 571 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 CEP95Q96GE4 821 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 CLMNQ96JQ2 1002 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 ZSWIM6Q9HCJ5 1215 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 CLIP2Q9UDT6 1046 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 STX8Q9UNK0 236 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 AFG3L2Q9Y4W6 797 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 TACC3Q9Y6A5 838 aa10.84□□□□□ -0.67
LDLR-210ENST00000559340 MANSC4A6NHS7 340 aaPredicted RBP10.83□□□□□ -0.68
LDLR-210ENST00000559340 HSPA8P11142 646 aaKnown RBP10.83□□□□□ -0.68
LDLR-210ENST00000559340 CETPP11597 493 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 EEF2P13639 858 aaKnown RBP10.83□□□□□ -0.68
LDLR-210ENST00000559340 RPS6KB1P23443 525 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 GUCY1A2P33402 732 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 LIFRP42702 1097 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 BACE1P56817 501 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 NOGQ13253 232 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 PABPC4Q13310 644 aaKnown RBP eCLIP10.83□□□□□ -0.68
LDLR-210ENST00000559340 RABEP1Q15276 862 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 ANKRD1Q15327 319 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 TMEM67Q5HYA8 995 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 OTUD7BQ6GQQ9 843 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 CYB5R4Q7L1T6 521 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 TBC1D32Q96NH3 1257 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 BEGAINQ9BUH8 593 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 KIAA1683Q9H0B3 1180 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 KAT14Q9H8E8 782 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 KCNH4Q9UQ05 1017 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 TMX2Q9Y320 296 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms