RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 ZMAT2Q96NC0 199 aaKnown RBP9.46□□□□□ -0.89
USP3-211ENST00000559257 UPF3BQ9BZI7 483 aaKnown RBP9.46□□□□□ -0.89
USP3-211ENST00000559257 TNMDQ9H2S6 317 aa9.46□□□□□ -0.89
USP3-211ENST00000559257 MRPL46Q9H2W6 279 aaKnown RBP9.46□□□□□ -0.89
USP3-211ENST00000559257 RGS12O14924 1447 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 ZC3H4Q9UPT8 1303 aaKnown RBP9.46□□□□□ -0.9
USP3-211ENST00000559257 BICDL2A1A5D9 508 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 HOXD11P31277 338 aaPredicted RBP9.46□□□□□ -0.9
USP3-211ENST00000559257 KIF5BP33176 963 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 CCT6AP40227 531 aaKnown RBP9.46□□□□□ -0.9
USP3-211ENST00000559257 CSE1LP55060 971 aaKnown RBP9.46□□□□□ -0.9
USP3-211ENST00000559257 TSR1Q2NL82 804 aaKnown RBP9.46□□□□□ -0.9
USP3-211ENST00000559257 PI16Q6UXB8 463 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 CCDC121Q6ZUS5 278 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 ERICH1Q86X53 443 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 NSUN7Q8NE18 718 aaKnown RBP9.46□□□□□ -0.9
USP3-211ENST00000559257 IL17RAQ96F46 866 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 L3MBTL3Q96JM7 780 aaPredicted RBP9.46□□□□□ -0.9
USP3-211ENST00000559257 SNX27Q96L92 541 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 ZCWPW1Q9H0M4 648 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 SYNCQ9H7C4 482 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 GINM1Q9NU53 330 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 SEL1LQ9UBV2 794 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 HPCAL4Q9UM19 191 aa9.46□□□□□ -0.9
USP3-211ENST00000559257 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.45□□□□□ -0.9
USP3-211ENST00000559257 GOLGA8KD6RF30 607 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 WDR46O15213 610 aaKnown RBP9.45□□□□□ -0.9
USP3-211ENST00000559257 BIRC5O15392 142 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 TTI1O43156 1089 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 SH3BP5O60239 455 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 CUTAO60888 179 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 ZNF132P52740 706 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 COL19A1Q14993 1142 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 RNF187Q5TA31 235 aaPredicted RBP9.45□□□□□ -0.9
USP3-211ENST00000559257 SLC7A5P1Q8MH63 180 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 TTC30BQ8N4P2 665 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 CLIP3Q96DZ5 547 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 UIMC1Q96RL1 719 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 PNKPQ96T60 521 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 NDNQ99608 321 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 VCX3BQ9H321 246 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 VCX3AQ9NNX9 186 aa9.45□□□□□ -0.9
USP3-211ENST00000559257 DPPA5A6NC42 116 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 TMEM110-MUSTN1A8MSY1 372 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 ZNF202O95125 648 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 FOSL1P15407 271 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 MLH1P40692 756 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 BPIFB4P59827 614 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 GUCY1B3Q02153 619 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 KIF5AQ12840 1032 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 MAP7Q14244 749 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 ZNF280CQ8ND82 737 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 VPS37AQ8NEZ2 397 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 KIFC2Q96AC6 838 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 SMC6Q96SB8 1091 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 SLC7A5P2Q9GIP4 190 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 CLSTN2Q9H4D0 955 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 MIS18AQ9NYP9 233 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 HESX1Q9UBX0 185 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 ZMAT5Q9UDW3 170 aaKnown RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 TNNQ9UQP3 1299 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 SLC4A7Q9Y6M7 1214 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 COL17A1Q9UMD9 1497 aaPredicted RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 APAF1O14727 1248 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 SART1O43290 800 aaKnown RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 PRC1O43663 620 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 WDHD1O75717 1129 aaPredicted RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 RAPGEF3O95398 923 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 F13A1P00488 732 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 GHRP10912 638 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 ENPP1P22413 925 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 EIF4A2Q14240 407 aaKnown RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 GIGYF2Q6Y7W6 1299 aaKnown RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 NR1H4Q96RI1 486 aaPredicted RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 EIF2AQ9BY44 585 aaKnown RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 PUS3Q9BZE2 481 aaKnown RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 TANGO6Q9C0B7 1094 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 EPN3Q9H201 632 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 CCDC68Q9H2F9 335 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 RPAP3Q9H6T3 665 aaPredicted RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 METTL14Q9HCE5 456 aaKnown RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 HAUS2Q9NVX0 235 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 TFIP11Q9UBB9 837 aaKnown RBP9.44□□□□□ -0.9
USP3-211ENST00000559257 EFR3BQ9Y2G0 817 aa9.44□□□□□ -0.9
USP3-211ENST00000559257 PRAG1Q86YV5 1406 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 IQGAP3Q86VI3 1631 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 N4BP3O15049 544 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 PFDN1O60925 122 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 PPP2R1AP30153 589 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 ELF3P78545 371 aaPredicted RBP9.43□□□□□ -0.9
USP3-211ENST00000559257 ARHGEF6Q15052 776 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 CFAP157Q5JU67 520 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 NAA35Q5VZE5 725 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 ARMCX5Q6P1M9 558 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 UBE2Q1Q7Z7E8 422 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 EXOC3L1Q86VI1 746 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 MORC4Q8TE76 937 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 SUGCTQ9HAC7 445 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 ZBTB40Q9NUA8 1239 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms