RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TFCP2Q12800 502 aa15.26■□□□□ 0.03
SHMT2-230ENST00000557427 ZNF384Q8TF68 577 aa15.26■□□□□ 0.03
SHMT2-230ENST00000557427 EDC3Q96F86 508 aaKnown RBP15.26■□□□□ 0.03
SHMT2-230ENST00000557427 RNPC3Q96LT9 517 aaKnown RBP15.26■□□□□ 0.03
SHMT2-230ENST00000557427 WDR18Q9BV38 432 aa15.26■□□□□ 0.03
SHMT2-230ENST00000557427 ZNF576Q9H609 170 aa15.26■□□□□ 0.03
SHMT2-230ENST00000557427 PNMA6EA0A0J9YXQ4 647 aa15.25■□□□□ 0.03
SHMT2-230ENST00000557427 ADORA1P30542 326 aa15.25■□□□□ 0.03
SHMT2-230ENST00000557427 CYP2C19P33261 490 aa15.25■□□□□ 0.03
SHMT2-230ENST00000557427 G3BP1Q13283 466 aaKnown RBP eCLIP15.25■□□□□ 0.038e-8■■■□□ 16.6
SHMT2-230ENST00000557427 MTX1Q13505 466 aa15.25■□□□□ 0.03
SHMT2-230ENST00000557427 SHROOM1Q2M3G4 852 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-230ENST00000557427 MFSD14CQ5VZR4 134 aa15.25■□□□□ 0.03
SHMT2-230ENST00000557427 NPLOC4Q8TAT6 608 aa15.25■□□□□ 0.03
SHMT2-230ENST00000557427 NECAB3Q96P71 396 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-230ENST00000557427 PAGR1Q9BTK6 254 aa15.25■□□□□ 0.03
SHMT2-230ENST00000557427 MSCO60682 206 aa15.24■□□□□ 0.03
SHMT2-230ENST00000557427 CNMDO75829 334 aa15.24■□□□□ 0.03
SHMT2-230ENST00000557427 ATP8B2P98198 1209 aa15.24■□□□□ 0.03
SHMT2-230ENST00000557427 NEUROD6Q96NK8 337 aa15.24■□□□□ 0.03
SHMT2-230ENST00000557427 AS3MTQ9HBK9 375 aa15.24■□□□□ 0.03
SHMT2-230ENST00000557427 GNL3LQ9NVN8 582 aaKnown RBP15.24■□□□□ 0.03
SHMT2-230ENST00000557427 THEGQ9P2T0 379 aa15.24■□□□□ 0.03
SHMT2-230ENST00000557427 DENND2AQ9ULE3 1009 aa15.24■□□□□ 0.03
SHMT2-230ENST00000557427 GPR75-ASB3A0A0A6YYF3 556 aa15.23■□□□□ 0.03
SHMT2-230ENST00000557427 NPM3O75607 178 aaKnown RBP15.23■□□□□ 0.03
SHMT2-230ENST00000557427 IGHDP01880 384 aa15.23■□□□□ 0.03
SHMT2-230ENST00000557427 MRPS5P82675 430 aaKnown RBP15.23■□□□□ 0.03
SHMT2-230ENST00000557427 ANO1Q5XXA6 986 aa15.23■□□□□ 0.03
SHMT2-230ENST00000557427 TMOD4Q9NZQ9 345 aa15.23■□□□□ 0.03
SHMT2-230ENST00000557427 MROH7-TTC4A0A0A0MT08 1334 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 XIRP2A4UGR9 3374 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-230ENST00000557427 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-230ENST00000557427 SEMA3EO15041 775 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 CYBAP13498 195 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 TLE2Q04725 743 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 ADGRE1Q14246 886 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 C1orf53Q5VUE5 145 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 DZIP1Q86YF9 867 aaKnown RBP15.22■□□□□ 0.03
SHMT2-230ENST00000557427 CCAR1Q8IX12 1150 aaKnown RBP15.22■□□□□ 0.03
SHMT2-230ENST00000557427 FERMT2Q96AC1 680 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 CHMP4BQ9H444 224 aaKnown RBP15.22■□□□□ 0.03
SHMT2-230ENST00000557427 RWDD1Q9H446 243 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-230ENST00000557427 EMILIN3Q9NT22 766 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 AKAP2Q9Y2D5 859 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-230ENST00000557427 CHD9Q3L8U1 2897 aa15.22■□□□□ 0.03
SHMT2-230ENST00000557427 A0A1B0GUL7 405 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 ZBTB22O15209 634 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 HOXC6P09630 235 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 PTPREP23469 700 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 PDE4AP27815 886 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 ADCYAP1R1P41586 468 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 ATP2B2Q01814 1243 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 OS9Q13438 667 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-230ENST00000557427 AKNAD1Q5T1N1 836 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 CCDC102BQ68D86 513 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 ARRDC4Q8NCT1 418 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 TIFAQ96CG3 184 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 XAGE2Q96GT9 111 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 BACH2Q9BYV9 841 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 PRDM12Q9H4Q4 367 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 ABCF2Q9UG63 623 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 ARIH1Q9Y4X5 557 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-230ENST00000557427 PCDHB15Q9Y5E8 787 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 SIPA1L1O43166 1804 aa15.21■□□□□ 0.03
SHMT2-230ENST00000557427 TCF20Q9UGU0 1960 aaKnown RBP15.2■□□□□ 0.02
SHMT2-230ENST00000557427 REV3LO60673 3130 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 SLC15A5A6NIM6 579 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 C19orf81C9J6K1 198 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 SURF6O75683 361 aaKnown RBP15.2■□□□□ 0.02
SHMT2-230ENST00000557427 PBX2P40425 430 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 MECOMQ03112 1051 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 RASGRF1Q13972 1273 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 CCDC85BQ15834 202 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-230ENST00000557427 GORABQ5T7V8 394 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 LRFN3Q9BTN0 628 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 C1QTNF1Q9BXJ1 281 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 DNAJC18Q9H819 358 aa15.2■□□□□ 0.02
SHMT2-230ENST00000557427 GRXCR1A8MXD5 290 aa15.19■□□□□ 0.02
SHMT2-230ENST00000557427 USP17L10C9JJH3 530 aa15.19■□□□□ 0.02
SHMT2-230ENST00000557427 KBTBD13C9JR72 458 aa15.19■□□□□ 0.02
SHMT2-230ENST00000557427 BMP1P13497 986 aa15.19■□□□□ 0.02
SHMT2-230ENST00000557427 POLA2Q14181 598 aa15.19■□□□□ 0.02
SHMT2-230ENST00000557427 GRB14Q14449 540 aa15.19■□□□□ 0.02
SHMT2-230ENST00000557427 ZGPATQ8N5A5 531 aaKnown RBP15.19■□□□□ 0.02
SHMT2-230ENST00000557427 RABGAP1Q9Y3P9 1069 aa15.19■□□□□ 0.02
SHMT2-230ENST00000557427 TACC3Q9Y6A5 838 aa15.19■□□□□ 0.02
SHMT2-230ENST00000557427 MYO9BQ13459 2157 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 KIAA0355O15063 1070 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 MYCNP04198 464 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-230ENST00000557427 ASNSP08243 561 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 HDAC1Q13547 482 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-230ENST00000557427 LRRC41Q15345 812 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 SLF2Q8IX21 1173 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 SSH3Q8TE77 659 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 GTF3C2Q8WUA4 911 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-230ENST00000557427 GAS2L1Q99501 681 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-230ENST00000557427 PBX4Q9BYU1 374 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms