RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 CCDC82Q8N4S0 544 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 TCP11L2Q8N4U5 519 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 PHACTR3Q96KR7 559 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 ARID3AQ99856 593 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 METTL22Q9BUU2 404 aaPredicted RBP8.28□□□□□ -1.08
LINC00643-203ENST00000555518 SALL4Q9UJQ4 1053 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 LEMD3Q9Y2U8 911 aa8.28□□□□□ -1.08
LINC00643-203ENST00000555518 RGPD2P0DJD1 1756 aa8.27□□□□□ -1.08
LINC00643-203ENST00000555518 FAM208AQ9UK61 1670 aaKnown RBP8.27□□□□□ -1.08
LINC00643-203ENST00000555518 KIAA0232Q92628 1395 aa8.27□□□□□ -1.09
LINC00643-203ENST00000555518 TOM1O60784 492 aa8.27□□□□□ -1.09
LINC00643-203ENST00000555518 CYP2E1P05181 493 aaPredicted RBP8.27□□□□□ -1.09
LINC00643-203ENST00000555518 CES1P23141 567 aa8.27□□□□□ -1.09
LINC00643-203ENST00000555518 MAP4P27816 1152 aaKnown RBP8.27□□□□□ -1.09
LINC00643-203ENST00000555518 ZC3H6P61129 1189 aaKnown RBP8.27□□□□□ -1.09
LINC00643-203ENST00000555518 FZD5Q13467 585 aa8.27□□□□□ -1.09
LINC00643-203ENST00000555518 CCDC27Q2M243 656 aa8.27□□□□□ -1.09
LINC00643-203ENST00000555518 NGEFQ8N5V2 710 aa8.27□□□□□ -1.09
LINC00643-203ENST00000555518 CLP1Q92989 425 aaKnown RBP8.27□□□□□ -1.09
LINC00643-203ENST00000555518 CYP4F12Q9HCS2 524 aa8.27□□□□□ -1.09
LINC00643-203ENST00000555518 PDE2AO00408 941 aaPredicted RBP8.26□□□□□ -1.09
LINC00643-203ENST00000555518 ATG7O95352 703 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 TMPOP42166 694 aaKnown RBP8.26□□□□□ -1.09
LINC00643-203ENST00000555518 NLRP12P59046 1061 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 PDE3BQ13370 1112 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 NBPF6Q5VWK0 638 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 SULT6B1Q6IMI4 303 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 ADAMTSL4Q6UY14 1074 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 TRMT2AQ8IZ69 625 aaKnown RBP8.26□□□□□ -1.09
LINC00643-203ENST00000555518 NBPF4Q96M43 638 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 FBXL18Q96ME1 805 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 SUGCTQ9HAC7 445 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 DZANK1Q9NVP4 752 aa8.26□□□□□ -1.09
LINC00643-203ENST00000555518 RRP7AQ9Y3A4 280 aaKnown RBP8.26□□□□□ -1.09
LINC00643-203ENST00000555518 FOSL1P15407 271 aa8.25□□□□□ -1.09
LINC00643-203ENST00000555518 ANKRD24Q8TF21 1146 aa8.25□□□□□ -1.09
LINC00643-203ENST00000555518 STK32AQ8WU08 396 aa8.25□□□□□ -1.09
LINC00643-203ENST00000555518 SLC7A3Q8WY07 619 aa8.25□□□□□ -1.09
LINC00643-203ENST00000555518 LRRC59Q96AG4 307 aaKnown RBP8.25□□□□□ -1.09
LINC00643-203ENST00000555518 MFSD14AQ96MC6 490 aa8.25□□□□□ -1.09
LINC00643-203ENST00000555518 OSBPL1AQ9BXW6 950 aa8.25□□□□□ -1.09
LINC00643-203ENST00000555518 TMEM63CQ9P1W3 806 aa8.25□□□□□ -1.09
LINC00643-203ENST00000555518 DLG5Q8TDM6 1919 aa8.25□□□□□ -1.09
LINC00643-203ENST00000555518 ZBTB39O15060 712 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 PRNPP04156 253 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 SLFN5Q08AF3 891 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 CHRNA2Q15822 529 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 NFE2L2Q16236 605 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 DUSP27Q5VZP5 1158 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 TMEM102Q8N9M5 508 aaPredicted RBP8.24□□□□□ -1.09
LINC00643-203ENST00000555518 SMG8Q8ND04 991 aaKnown RBP8.24□□□□□ -1.09
LINC00643-203ENST00000555518 LTV1Q96GA3 475 aaPredicted RBP8.24□□□□□ -1.09
LINC00643-203ENST00000555518 YIPF2Q9BWQ6 316 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 SOX17Q9H6I2 414 aaPredicted RBP8.24□□□□□ -1.09
LINC00643-203ENST00000555518 KANSL3Q9P2N6 904 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 SOX13Q9UN79 622 aa8.24□□□□□ -1.09
LINC00643-203ENST00000555518 COL5A2P05997 1499 aaPredicted RBP8.24□□□□□ -1.09
LINC00643-203ENST00000555518 LRRC37A3O60309 1634 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 ZBTB7CA1YPR0 619 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 NFKBIEO00221 500 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 RXRBP28702 533 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 PAOXQ6QHF9 649 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 VSIG10LQ86VR7 867 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 HOMEZQ8IX15 550 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 USHBP1Q8N6Y0 703 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 C12orf50Q8NA57 414 aaPredicted RBP8.23□□□□□ -1.09
LINC00643-203ENST00000555518 BSNDQ8WZ55 320 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 TMPRSS13Q9BYE2 586 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 PNNQ9H307 717 aaKnown RBP8.23□□□□□ -1.09
LINC00643-203ENST00000555518 MAPK8IP3Q9UPT6 1336 aa8.23□□□□□ -1.09
LINC00643-203ENST00000555518 COL14A1Q05707 1796 aaKnown RBP8.22□□□□□ -1.09
LINC00643-203ENST00000555518 FAM83GA6ND36 823 aa8.22□□□□□ -1.09
LINC00643-203ENST00000555518 RIPK4P57078 832 aa8.22□□□□□ -1.09
LINC00643-203ENST00000555518 IKBKEQ14164 716 aa8.22□□□□□ -1.09
LINC00643-203ENST00000555518 MTHFSDQ2M296 383 aaKnown RBP8.22□□□□□ -1.09
LINC00643-203ENST00000555518 CAPN12Q6ZSI9 719 aa8.22□□□□□ -1.09
LINC00643-203ENST00000555518 WDR63Q8IWG1 891 aa8.22□□□□□ -1.09
LINC00643-203ENST00000555518 ASIC4Q96FT7 647 aa8.22□□□□□ -1.09
LINC00643-203ENST00000555518 CNTN3Q9P232 1028 aa8.22□□□□□ -1.09
LINC00643-203ENST00000555518 MEGF6O75095 1541 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 FAM95CA0A1B0GW59 222 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 MSMPQ1L6U9 139 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 TMEM164Q5U3C3 297 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 ABI1Q8IZP0 508 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 PRDM11Q9NQV5 511 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 IL16Q14005 1332 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 RNF123Q5XPI4 1314 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 PLEKHG2Q9H7P9 1386 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 PLCH1Q4KWH8 1693 aa8.21□□□□□ -1.1
LINC00643-203ENST00000555518 NRAPQ86VF7 1730 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 E9PSI1 815 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 TIAF1O95411 115 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 EDN3P14138 238 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 HOXA10P31260 410 aaPredicted RBP8.2□□□□□ -1.1
LINC00643-203ENST00000555518 SGO2Q562F6 1265 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 C1orf127Q8N9H9 656 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 CCDC39Q9UFE4 941 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 LRP6O75581 1613 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 WDR17Q8IZU2 1322 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 ADAMTS7Q9UKP4 1686 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms