RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SBK1Q52WX2 424 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 KIAA1755Q5JYT7 1200 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 FBXO46Q6PJ61 603 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 POTEEQ6S8J3 1075 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 SKAP1Q86WV1 359 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 ANKRD13CQ8N6S4 541 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 TRIM47Q96LD4 638 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 P2RX7Q99572 595 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 FEZ1Q99689 392 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 TMOD4Q9NZQ9 345 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 SWAP70Q9UH65 585 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 SLC45A1Q9Y2W3 748 aa13.87□□□□□ -0.19
CCDC88C-208ENST00000554165 C19orf81C9J6K1 198 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 PRDM1O75626 825 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 GNAT2P19087 354 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 PSMC4P43686 418 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 PKN2Q16513 984 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 GIMAP6Q6P9H5 292 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 USP17L2Q6R6M4 530 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 ZNF589Q86UQ0 364 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 AMOTL1Q8IY63 956 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 SMCR8Q8TEV9 937 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 INCENPQ9NQS7 918 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 ARPP21Q9UBL0 812 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 PTPN22Q9Y2R2 807 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 TACC3Q9Y6A5 838 aa13.86□□□□□ -0.19
CCDC88C-208ENST00000554165 SDSP20132 328 aa13.85□□□□□ -0.19
CCDC88C-208ENST00000554165 RASA1P20936 1047 aa13.85□□□□□ -0.19
CCDC88C-208ENST00000554165 TMEM179Q6ZVK1 233 aa13.85□□□□□ -0.19
CCDC88C-208ENST00000554165 KIAA1683Q9H0B3 1180 aa13.85□□□□□ -0.19
CCDC88C-208ENST00000554165 PTCH2Q9Y6C5 1203 aa13.85□□□□□ -0.19
CCDC88C-208ENST00000554165 FMNL1O95466 1100 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 GSPT1P15170 499 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 OSBPP22059 807 aa13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 HOXA7P31268 230 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 SOX10P56693 466 aa13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 IRX3P78415 501 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 CTDSPL2Q05D32 466 aa13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 MCMDC2Q4G0Z9 681 aa13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 NAPBQ9H115 298 aa13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 TXNRD2Q9NNW7 524 aa13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 HELLSQ9NRZ9 838 aa13.84□□□□□ -0.19
CCDC88C-208ENST00000554165 EEF2P13639 858 aaKnown RBP13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 VCAM1P19320 739 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 HERVK_113P62684 666 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 ATP2B2Q01814 1243 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 ICA1Q05084 483 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 KIF22Q14807 665 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 SPICE1Q8N0Z3 855 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 C12orf42Q96LP6 360 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 CCDC17Q96LX7 622 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 NACAP1Q9BZK3 213 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 MKNK2Q9HBH9 465 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 RBPJLQ9UBG7 517 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 PNMA3Q9UL41 463 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 GABRQQ9UN88 632 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 MYH8P13535 1937 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 DOCK3Q8IZD9 2030 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 ROBO3Q96MS0 1386 aa13.83□□□□□ -0.2
CCDC88C-208ENST00000554165 HSPD1P10809 573 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 PPARAQ07869 468 aa13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 PABPC4Q13310 644 aaKnown RBP eCLIP13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 Q3C1V9 767 aa13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 FAM47AQ5JRC9 791 aa13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 TTC22Q5TAA0 569 aa13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 CWC27Q6UX04 472 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 IL25Q9H293 177 aa13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 RPAP3Q9H6T3 665 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 KIAA0100Q14667 2235 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L15C9J2P7 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L13C9JLJ4 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L11C9JVI0 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L18D6R9N7 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L22D6RA61 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L17D6RBQ6 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L19D6RCP7 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L20D6RJB6 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 MYCP01106 439 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 FGAP02671 866 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP14P54578 494 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 PRKCZQ05513 592 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 USP17L24Q0WX57 530 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 CATSPERGQ6ZRH7 1159 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 NKX2-3Q8TAU0 364 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 SH3TC2Q8TF17 1288 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 PAGR1Q9BTK6 254 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 SRRDQ9UH36 339 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 TMX2Q9Y320 296 aa13.81□□□□□ -0.2
CCDC88C-208ENST00000554165 IGKV6D-41A0A0C4DH26 115 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 CNMDO75829 334 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 GCLCP48506 637 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 FCGRTP55899 365 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 HAND2P61296 217 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 ALX1Q15699 326 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 FAM110CQ1W6H9 321 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 KANSL2Q9H9L4 492 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 ARHGEF10LQ9HCE6 1279 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 DIAPH3Q9NSV4 1193 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 MORF4L1Q9UBU8 362 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms