RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 SBK1Q52WX2 424 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 ZMYM1Q5SVZ6 1142 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 B4GALNT3Q6L9W6 998 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 GIMAP6Q6P9H5 292 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 USP17L2Q6R6M4 530 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 C16orf86Q6ZW13 317 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 SMCR8Q8TEV9 937 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 C12orf42Q96LP6 360 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 FSD1Q9BTV5 496 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 CABP5Q9NP86 173 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 PNMA3Q9UL41 463 aa12.34□□□□□ -0.43
CCDC88C-206ENST00000553437 A0A1W2PRG0 241 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 FMNL1O95466 1100 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 AKR1B1P15121 316 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 PRMT2P55345 433 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 FAM110CQ1W6H9 321 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 LRRFIP1Q32MZ4 808 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 POTEEQ6S8J3 1075 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 CHD1LQ86WJ1 897 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 SIAH1Q8IUQ4 282 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 ANKRD13CQ8N6S4 541 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 EVI5LQ96CN4 794 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 DDRGK1Q96HY6 314 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 P2RX7Q99572 595 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 KIAA1683Q9H0B3 1180 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 EPB41L4AQ9HCS5 686 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 SRRDQ9UH36 339 aa12.33□□□□□ -0.44
CCDC88C-206ENST00000553437 PATL2C9JE40 543 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 MPHOSPH10O00566 681 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 GNAT2P19087 354 aa12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 GCLCP48506 637 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 FCGRTP55899 365 aa12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 IRX6P78412 446 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 TMEM179Q6ZVK1 233 aa12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 PLEKHM2Q8IWE5 1019 aa12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 AMOTL1Q8IY63 956 aa12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 CCDC17Q96LX7 622 aa12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 ARPP21Q9UBL0 812 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-206ENST00000553437 FOXP2O15409 715 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 HOXD10P28358 340 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 USP14P54578 494 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 HERVK_113P62684 666 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 IRX3P78415 501 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 PRKCZQ05513 592 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 ZYXQ15942 572 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 ZNF333Q96JL9 665 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 FEZ1Q99689 392 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 OSBPL3Q9H4L5 887 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 MORF4L1Q9UBU8 362 aa12.31□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L15C9J2P7 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L13C9JLJ4 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L11C9JVI0 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L18D6R9N7 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L22D6RA61 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L17D6RBQ6 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L19D6RCP7 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L20D6RJB6 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 PEX10O60683 326 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 VCAM1P19320 739 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 USP17L24Q0WX57 530 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 SLC9C1Q4G0N8 1177 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 KIAA1755Q5JYT7 1200 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 CATSPERGQ6ZRH7 1159 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 CLEC10AQ8IUN9 316 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 IFNL3Q8IZI9 196 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 TXNRD2Q9NNW7 524 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 RBPJLQ9UBG7 517 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 GABRQQ9UN88 632 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 MYH1P12882 1939 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 A0A0C4DFX4 3053 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 MYPNQ86TC9 1320 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 LOC285556D6RIA3 1793 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 ROBO3Q96MS0 1386 aa12.3□□□□□ -0.44
CCDC88C-206ENST00000553437 MKI67P46013 3256 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 PTPRFP10586 1907 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 POTEFA5A3E0 1075 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 MINDY4BA8MYZ0 360 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 APPP05067 770 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 RASA1P20936 1047 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 Q3C1V9 767 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 PRPF38BQ5VTL8 546 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 CCDC129Q6ZRS4 1044 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 TICAM2Q86XR7 235 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 SH3TC2Q8TF17 1288 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 TMX2Q9Y320 296 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 BRCA2P51587 3418 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 NAV1Q8NEY1 1877 aa12.29□□□□□ -0.44
CCDC88C-206ENST00000553437 ATAD5Q96QE3 1844 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 TNPO2O14787 897 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 CNMDO75829 334 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 TDO2P48775 406 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 FLT3LGP49771 235 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 ICA1Q05084 483 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 NBPF11Q86T75 865 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 STK11IPQ8N1F8 1099 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 GPRC5AQ8NFJ5 357 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 RAET1EQ8TD07 263 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 FAM227BQ96M60 508 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 KANSL2Q9H9L4 492 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms