RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SART3Q15020 963 aaKnown RBP8.57□□□□□ -1.04
LIMA1-213ENST00000552720 SEC23AQ15436 765 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 PKN1Q16512 942 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 NT5DC1Q5TFE4 455 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 UBAC1Q9BSL1 405 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 NACAP1Q9BZK3 213 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 SRPRBQ9Y5M8 271 aaKnown RBP8.57□□□□□ -1.04
LIMA1-213ENST00000552720 ARHGAP6O43182 974 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 SEC31AO94979 1220 aaKnown RBP8.57□□□□□ -1.04
LIMA1-213ENST00000552720 KARSQ15046 597 aaKnown RBP8.57□□□□□ -1.04
LIMA1-213ENST00000552720 ENAHQ8N8S7 591 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-213ENST00000552720 RAI14Q9P0K7 980 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 DLEC1Q9Y238 1755 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 DUOX1Q9NRD9 1551 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 WNK3Q9BYP7 1800 aa8.57□□□□□ -1.04
LIMA1-213ENST00000552720 BCL9LQ86UU0 1499 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 LAMB2P55268 1798 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 EXOC5O00471 708 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 NMT2O60551 498 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 CRKLP46109 303 aaKnown RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 GNG11P61952 73 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 SPECC1LQ69YQ0 1117 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 C3orf67Q6ZVT6 689 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 SMIM5Q71RC9 77 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 MLKLQ8NB16 471 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 ENOX1Q8TC92 643 aaKnown RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 ZNF384Q8TF68 577 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 CPLX3Q8WVH0 158 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 MRPL44Q9H9J2 332 aaKnown RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 NIP7Q9Y221 180 aaKnown RBP eCLIP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 FHOD1Q9Y613 1164 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 V9GY48 417 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 MAGEB6P1A0A0J9YX57 407 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 SOWAHDA6NJG2 315 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 TADA3O75528 432 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 NTSR2O95665 410 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 VEGFAP15692 232 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 GNAT2P19087 354 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 ATP6V1AP38606 617 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 IGHMBP2P38935 993 aaKnown RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 ITPK1Q13572 414 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 NR1I3Q14994 352 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 TERF2Q15554 542 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 ZNF174Q15697 407 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 SLC4A8Q2Y0W8 1093 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 APTXQ7Z2E3 356 aaKnown RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 MNS1Q8NEH6 495 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 SPOCK2Q92563 424 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 UBXN4Q92575 508 aa8.56□□□□□ -1.04
LIMA1-213ENST00000552720 SYMPKQ92797 1274 aaKnown RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 HOOK1Q9UJC3 728 aaKnown RBP8.56□□□□□ -1.04
LIMA1-213ENST00000552720 ZSCAN12O43309 604 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 CAMTA2O94983 1202 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 PLCD1P51178 756 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 GABPB1Q06547 395 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 FUT2Q10981 343 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 DPYDQ12882 1025 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 CCDC152Q4G0S7 254 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 ZNF579Q8NAF0 562 aaKnown RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 SPATA20Q8TB22 786 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 RIOK1Q9BRS2 568 aaKnown RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 CCDC87Q9NVE4 849 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 CCDC196A0A1B0GTZ2 297 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 TRIM75PA6NK02 468 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 CCP110O43303 1012 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 KIF20AO95235 890 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 PNMA6AP0CW24 399 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 KLRK1P26718 216 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 PLA2G4AP47712 749 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 DHX8Q14562 1220 aaKnown RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 NPY5RQ15761 445 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 NUTM2AQ8IVF1 878 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 ELOA2Q8IYF1 753 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 ESR2Q92731 530 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 ZBTB9Q96C00 473 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 PAGE5Q96GU1 130 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 ZSCAN10Q96SZ4 725 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 PHF20Q9BVI0 1012 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 RNF26Q9BY78 433 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 BLZF1Q9H2G9 400 aa8.55□□□□□ -1.04
LIMA1-213ENST00000552720 RNF41Q9H4P4 317 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-213ENST00000552720 SCN7AQ01118 1682 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 A0A1B0GTH6 734 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 STX10O60499 249 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 KRT2P35908 639 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 KCNQ4P56696 695 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 AKAP17AQ02040 695 aaKnown RBP8.54□□□□□ -1.04
LIMA1-213ENST00000552720 RBL2Q08999 1139 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 RAD9BQ6WBX8 426 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 KIFC2Q96AC6 838 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 ZSWIM4Q9H7M6 989 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 LZTFL1Q9NQ48 299 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 SYNRGQ9UMZ2 1314 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 COL14A1Q05707 1796 aaKnown RBP8.54□□□□□ -1.04
LIMA1-213ENST00000552720 COL16A1Q07092 1604 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-213ENST00000552720 MYO1BO43795 1136 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 ZRANB2O95218 330 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMA1-213ENST00000552720 ABL1P00519 1130 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 TFRCP02786 760 aaKnown RBP8.54□□□□□ -1.04
LIMA1-213ENST00000552720 CASQ1P31415 396 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms