RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 TMPRSS7Q7RTY8 843 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 RGS22Q8NE09 1264 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 PDZD8Q8NEN9 1154 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 ABCB6Q9NP58 842 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 LUC7LQ9NQ29 371 aaKnown RBP3.74□□□□□ -1.81
LIMA1-209ENST00000552008 YBX2Q9Y2T7 364 aaKnown RBP3.74□□□□□ -1.81
LIMA1-209ENST00000552008 K7ESM1 405 aa3.73□□□□□ -1.81
LIMA1-209ENST00000552008 LRIG2O94898 1065 aa3.73□□□□□ -1.81
LIMA1-209ENST00000552008 NPR3P17342 541 aa3.73□□□□□ -1.81
LIMA1-209ENST00000552008 RTP5Q14D33 572 aa3.73□□□□□ -1.81
LIMA1-209ENST00000552008 TIGD5Q53EQ6 642 aa3.73□□□□□ -1.81
LIMA1-209ENST00000552008 ZNF326Q5BKZ1 582 aaKnown RBP3.73□□□□□ -1.81
LIMA1-209ENST00000552008 GJD3Q8N144 294 aa3.73□□□□□ -1.81
LIMA1-209ENST00000552008 BCL2L13Q9BXK5 485 aa3.73□□□□□ -1.81
LIMA1-209ENST00000552008 CSADQ9Y600 493 aa3.73□□□□□ -1.81
LIMA1-209ENST00000552008 PRICKLE3O43900 615 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-209ENST00000552008 CILPO75339 1184 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 CBX7O95931 251 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 NEFLP07196 543 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 ARHGAP4P98171 946 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 PLCB3Q01970 1234 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 PPP2R3AQ06190 1150 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 EAPPQ56P03 285 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-209ENST00000552008 MAP1SQ66K74 1059 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-209ENST00000552008 CREG2Q8IUH2 290 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 OXR1Q8N573 874 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 GPBAR1Q8TDU6 330 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 DMRTB1Q96MA1 342 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 ASB16Q96NS5 453 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 CITED4Q96RK1 184 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 RBCK1Q9BYM8 510 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 CCDC87Q9NVE4 849 aa3.72□□□□□ -1.81
LIMA1-209ENST00000552008 CNOT11Q9UKZ1 510 aaKnown RBP3.72□□□□□ -1.81
LIMA1-209ENST00000552008 FITM1A5D6W6 292 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 FANCGO15287 622 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 MAPK8P45983 427 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 ATP2B2Q01814 1243 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 ZBTB37Q5TC79 503 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 USPL1Q5W0Q7 1092 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 PRPF40BQ6NWY9 871 aaKnown RBP3.71□□□□□ -1.82
LIMA1-209ENST00000552008 TMC7Q7Z402 723 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 KCT2Q8NC54 265 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 ACSBG1Q96GR2 724 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 MIPEPQ99797 713 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 WDR26Q9H7D7 661 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 EPB41L4AQ9HCS5 686 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-209ENST00000552008 NPHS2Q9NP85 383 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 TMEM39AQ9NV64 488 aa3.71□□□□□ -1.82
LIMA1-209ENST00000552008 GPN3Q9UHW5 284 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-209ENST00000552008 MBD1Q9UIS9 605 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-209ENST00000552008 TMEM238LA0A1B0GVL6 79 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 DCDC2CA8MYV0 355 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 E9PSI1 815 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 FZD6O60353 706 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 ZGLP1P0C6A0 271 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 EPHB3P54753 998 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 SRSF3P84103 164 aaKnown RBP3.7□□□□□ -1.82
LIMA1-209ENST00000552008 NR0B2Q15466 257 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 DNAJC14Q6Y2X3 702 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-209ENST00000552008 SULF2Q8IWU5 870 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 STK35Q8TDR2 534 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 GIPC2Q8TF65 315 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 NIF3L1Q9GZT8 377 aa3.7□□□□□ -1.82
LIMA1-209ENST00000552008 OR14I1A6ND48 311 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 ARNTP27540 789 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 ITGAEP38570 1179 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 MAGEA10P43363 369 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-209ENST00000552008 XPCQ01831 940 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-209ENST00000552008 RING1Q06587 406 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 TNK2Q07912 1038 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 ZNF746Q6NUN9 644 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-209ENST00000552008 CNKSR3Q6P9H4 555 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 C12orf40Q86WS4 652 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 PPP1R13LQ8WUF5 828 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 MRIQ9BWK5 157 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 SCAND2PQ9GZW5 306 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-209ENST00000552008 SLITRK6Q9H5Y7 841 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 SIRT5Q9NXA8 310 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 GPR160Q9UJ42 338 aa3.69□□□□□ -1.82
LIMA1-209ENST00000552008 WASH4PA8MWX3 477 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 N4BP3O15049 544 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 KIR3DL1P43629 444 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 ADAM17P78536 824 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 SNX17Q15036 470 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 CRB2Q5IJ48 1285 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 LINC01356Q8N9X3 169 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 ZNF507Q8TCN5 953 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 EMILIN2Q9BXX0 1053 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 MRS2Q9HD23 443 aa3.68□□□□□ -1.82
LIMA1-209ENST00000552008 PNMA6FA0A0J9YX94 578 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 RBM47A0AV96 593 aaKnown RBP3.67□□□□□ -1.82
LIMA1-209ENST00000552008 RBAK-RBAKDNI3L0D1 243 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 HRKO00198 91 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 IRS4O14654 1257 aaPredicted RBP3.67□□□□□ -1.82
LIMA1-209ENST00000552008 TREHO43280 583 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 LDHBP07195 334 aaKnown RBP3.67□□□□□ -1.82
LIMA1-209ENST00000552008 GALK1P51570 392 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 EGR3Q06889 387 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 ZNF252P-AS1Q0IIN9 211 aa3.67□□□□□ -1.82
LIMA1-209ENST00000552008 UBXN11Q5T124 520 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms