RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 TMEM179Q6ZVK1 233 aa13.69□□□□□ -0.22
YBX3-216ENST00000544622 CCDC17Q96LX7 622 aa13.69□□□□□ -0.22
YBX3-216ENST00000544622 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.69□□□□□ -0.22
YBX3-216ENST00000544622 ASCC2Q9H1I8 757 aaPredicted RBP13.69□□□□□ -0.22
YBX3-216ENST00000544622 PNMA3Q9UL41 463 aa13.69□□□□□ -0.22
YBX3-216ENST00000544622 AKR1B1P15121 316 aa13.68□□□□□ -0.22
YBX3-216ENST00000544622 PDE4AP27815 886 aa13.68□□□□□ -0.22
YBX3-216ENST00000544622 PABPC4Q13310 644 aaKnown RBP eCLIP13.68□□□□□ -0.22
YBX3-216ENST00000544622 USP17L2Q6R6M4 530 aa13.68□□□□□ -0.22
YBX3-216ENST00000544622 AMOTL1Q8IY63 956 aa13.68□□□□□ -0.22
YBX3-216ENST00000544622 TRIM47Q96LD4 638 aa13.68□□□□□ -0.22
YBX3-216ENST00000544622 HELLSQ9NRZ9 838 aa13.68□□□□□ -0.22
YBX3-216ENST00000544622 TMOD4Q9NZQ9 345 aa13.68□□□□□ -0.22
YBX3-216ENST00000544622 MKI67P46013 3256 aaKnown RBP13.68□□□□□ -0.22
YBX3-216ENST00000544622 RASA1P20936 1047 aa13.67□□□□□ -0.22
YBX3-216ENST00000544622 OSBPP22059 807 aa13.67□□□□□ -0.22
YBX3-216ENST00000544622 PSMC4P43686 418 aa13.67□□□□□ -0.22
YBX3-216ENST00000544622 GCLCP48506 637 aaPredicted RBP13.67□□□□□ -0.22
YBX3-216ENST00000544622 USP14P54578 494 aa13.67□□□□□ -0.22
YBX3-216ENST00000544622 KIF22Q14807 665 aa13.67□□□□□ -0.22
YBX3-216ENST00000544622 FAM110CQ1W6H9 321 aa13.67□□□□□ -0.22
YBX3-216ENST00000544622 ANKRD13CQ8N6S4 541 aa13.67□□□□□ -0.22
YBX3-216ENST00000544622 SMCR8Q8TEV9 937 aaPredicted RBP13.67□□□□□ -0.22
YBX3-216ENST00000544622 FAM227BQ96M60 508 aa13.67□□□□□ -0.22
YBX3-216ENST00000544622 P2RX7Q99572 595 aaKnown RBP13.67□□□□□ -0.22
YBX3-216ENST00000544622 A0A0D9SFI3 127 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 PRMT2P55345 433 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 MCMDC2Q4G0Z9 681 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 VPS53Q5VIR6 699 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 CATSPERGQ6ZRH7 1159 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 CCDC129Q6ZRS4 1044 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 ARMC5Q96C12 935 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 MORF4L1Q9UBU8 362 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 SRRDQ9UH36 339 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 TMX2Q9Y320 296 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 ZSWIM8A7E2V4 1837 aa13.66□□□□□ -0.22
YBX3-216ENST00000544622 MINDY4BA8MYZ0 360 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 MPHOSPH10O00566 681 aaKnown RBP13.65□□□□□ -0.22
YBX3-216ENST00000544622 APPP05067 770 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 VCAM1P19320 739 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 SDSP20132 328 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 TDO2P48775 406 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 HERVK_113P62684 666 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 ALX1Q15699 326 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 KIAA1755Q5JYT7 1200 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 LBX2Q6XYB7 198 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 NACAP1Q9BZK3 213 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 KANSL2Q9H9L4 492 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 TXNRD2Q9NNW7 524 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 RBPJLQ9UBG7 517 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 PTCH2Q9Y6C5 1203 aa13.65□□□□□ -0.22
YBX3-216ENST00000544622 IGKV6D-41A0A0C4DH26 115 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 TRIM6-TRIM34B2RNG4 842 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L15C9J2P7 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L13C9JLJ4 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L11C9JVI0 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L18D6R9N7 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L22D6RA61 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L17D6RBQ6 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L19D6RCP7 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L20D6RJB6 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 FCGRTP55899 365 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 USP17L24Q0WX57 530 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 NMIQ13287 307 aaPredicted RBP13.64□□□□□ -0.23
YBX3-216ENST00000544622 ZYXQ15942 572 aaKnown RBP13.64□□□□□ -0.23
YBX3-216ENST00000544622 Q3C1V9 767 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 ZNF589Q86UQ0 364 aaPredicted RBP13.64□□□□□ -0.23
YBX3-216ENST00000544622 RILPL2Q969X0 211 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 ANAPC4Q9UJX5 808 aa13.64□□□□□ -0.23
YBX3-216ENST00000544622 GREB1LQ9C091 1923 aaPredicted RBP13.63□□□□□ -0.23
YBX3-216ENST00000544622 FMNL1O95466 1100 aaPredicted RBP13.63□□□□□ -0.23
YBX3-216ENST00000544622 FGRP09769 529 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 HSPD1P10809 573 aaKnown RBP13.63□□□□□ -0.23
YBX3-216ENST00000544622 EEF2P13639 858 aaKnown RBP13.63□□□□□ -0.23
YBX3-216ENST00000544622 GSPT1P15170 499 aaKnown RBP13.63□□□□□ -0.23
YBX3-216ENST00000544622 HOXD10P28358 340 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 IRX3P78415 501 aaPredicted RBP13.63□□□□□ -0.23
YBX3-216ENST00000544622 ICA1Q05084 483 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 PPARAQ07869 468 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 CLEC10AQ8IUN9 316 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 LPAR1Q92633 364 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 ZNF333Q96JL9 665 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 FEZ1Q99689 392 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 NAPBQ9H115 298 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 VCPKMTQ9H867 229 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 MKNK2Q9HBH9 465 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 TACC3Q9Y6A5 838 aa13.63□□□□□ -0.23
YBX3-216ENST00000544622 PEX10O60683 326 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 CNMDO75829 334 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 FGAP02671 866 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 PRKCZQ05513 592 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 GPRC5AQ8NFJ5 357 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 GTF3C2Q8WUA4 911 aaPredicted RBP13.62□□□□□ -0.23
YBX3-216ENST00000544622 MKL1Q969V6 931 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 RPAP3Q9H6T3 665 aaPredicted RBP13.62□□□□□ -0.23
YBX3-216ENST00000544622 ZNF287Q9HBT7 754 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 ARHGEF10LQ9HCE6 1279 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 NYAP2Q9P242 653 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 GJD2Q9UKL4 321 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 GABRQQ9UN88 632 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms