RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
DDB1-222	ENST00000543627	GIMAP6	Q6P9H5	292 aa		13.18	□□□□□ -0.3
DDB1-222	ENST00000543627	C16orf86	Q6ZW13	317 aa		13.18	□□□□□ -0.3
DDB1-222	ENST00000543627	ZCCHC17	Q9NP64	241 aa	Known RBP	13.18	□□□□□ -0.3
DDB1-222	ENST00000543627	TOMM22	Q9NS69	142 aa		13.18	□□□□□ -0.3
DDB1-222	ENST00000543627	PNMA3	Q9UL41	463 aa		13.18	□□□□□ -0.3
DDB1-222	ENST00000543627	GUCY1A2	P33402	732 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	CTDSPL2	Q05D32	466 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	ARHGEF6	Q15052	776 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	SBK1	Q52WX2	424 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	TTC22	Q5TAA0	569 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	TMEM179	Q6ZVK1	233 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	SKAP1	Q86WV1	359 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	ANKRD13C	Q8N6S4	541 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	ARHGAP39	Q9C0H5	1083 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	EMILIN3	Q9NT22	766 aa		13.17	□□□□□ -0.3
DDB1-222	ENST00000543627	PSMC4	P43686	418 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	USP14	P54578	494 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	ICA1	Q05084	483 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	PPARA	Q07869	468 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	NOM1	Q5C9Z4	860 aa	Known RBP	13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	SH3D19	Q5HYK7	790 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	RRP12	Q5JTH9	1297 aa	Known RBP	13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	C17orf99	Q6UX52	265 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	OTOP1	Q7RTM1	612 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	CHMP4C	Q96CF2	233 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	CCDC17	Q96LX7	622 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	ZNF287	Q9HBT7	754 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	ARHGEF10L	Q9HCE6	1279 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627	INCENP	Q9NQS7	918 aa		13.16	□□□□□ -0.3
DDB1-222	ENST00000543627		A0A1W2PRG0	241 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	HIP1	O00291	1037 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	PEX10	O60683	326 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	MYC	P01106	439 aa	Predicted RBP	13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	GSPT1	P15170	499 aa	Known RBP	13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	MFAP1	P55081	439 aa	Known RBP	13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	HAND2	P61296	217 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	LACTB	P83111	547 aa	Predicted RBP	13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	PDE4B	Q07343	736 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	FAM47A	Q5JRC9	791 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	CCAR1	Q8IX12	1150 aa	Known RBP	13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	SPICE1	Q8N0Z3	855 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	P2RX7	Q99572	595 aa	Known RBP	13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	PAGR1	Q9BTK6	254 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	TAOK2	Q9UL54	1235 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	ISY1	Q9ULR0	285 aa	Known RBP	13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	PHIP	Q8WWQ0	1821 aa		13.15	□□□□□ -0.3
DDB1-222	ENST00000543627	CCDC171	Q6TFL3	1326 aa		13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	RANBP6	O60518	1105 aa	Known RBP	13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	TSPY3	P0CV98	308 aa		13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	TSPY8	P0CW00	308 aa		13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	HSPD1	P10809	573 aa	Known RBP	13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	EEF2	P13639	858 aa	Known RBP	13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	RASA1	P20936	1047 aa		13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	CAP1	Q01518	475 aa		13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	TFAP4	Q01664	338 aa		13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	PKN2	Q16513	984 aa	Known RBP	13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	TANGO6	Q9C0B7	1094 aa		13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	CWC22	Q9HCG8	908 aa	Known RBP	13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	SLC45A1	Q9Y2W3	748 aa		13.14	□□□□□ -0.31
DDB1-222	ENST00000543627	TSPY2	A6NKD2	308 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L15	C9J2P7	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L13	C9JLJ4	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L11	C9JVI0	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L18	D6R9N7	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L22	D6RA61	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L17	D6RBQ6	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L19	D6RCP7	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L20	D6RJB6	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	FGA	P02671	866 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	FCGRT	P55899	365 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	USP17L24	Q0WX57	530 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	KIAA1683	Q9H0B3	1180 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	SH2D4A	Q9H788	454 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	KANSL2	Q9H9L4	492 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	CLIP2	Q9UDT6	1046 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	HPS5	Q9UPZ3	1129 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	MTMR7	Q9Y216	660 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	PTPN22	Q9Y2R2	807 aa		13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	DDX60L	Q5H9U9	1706 aa	Known RBP	13.13	□□□□□ -0.31
DDB1-222	ENST00000543627	MYH8	P13535	1937 aa		13.12	□□□□□ -0.31
DDB1-222	ENST00000543627	TNPO2	O14787	897 aa	Known RBP	13.12	□□□□□ -0.31
DDB1-222	ENST00000543627	VCAM1	P19320	739 aa		13.12	□□□□□ -0.31
DDB1-222	ENST00000543627	HOXD10	P28358	340 aa		13.12	□□□□□ -0.31
DDB1-222	ENST00000543627	GCLC	P48506	637 aa	Predicted RBP	13.12	□□□□□ -0.31
DDB1-222	ENST00000543627	HERVK_113	P62684	666 aa		13.12	□□□□□ -0.31
DDB1-222	ENST00000543627	WDR78	Q5VTH9	848 aa		13.12	□□□□□ -0.31
DDB1-222	ENST00000543627	ZNF213	O14771	459 aa		13.11	□□□□□ -0.31
DDB1-222	ENST00000543627	FOXP2	O15409	715 aa		13.11	□□□□□ -0.31
DDB1-222	ENST00000543627	BCR	P11274	1271 aa		13.11	□□□□□ -0.31
DDB1-222	ENST00000543627	CTGF	P29279	349 aa		13.11	□□□□□ -0.31
DDB1-222	ENST00000543627	HOXA7	P31268	230 aa	Predicted RBP	13.11	□□□□□ -0.31
DDB1-222	ENST00000543627	KIAA1755	Q5JYT7	1200 aa		13.11	□□□□□ -0.31
DDB1-222	ENST00000543627	CATSPERG	Q6ZRH7	1159 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms