RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 NTRK3Q16288 839 aa20.69■□□□□ 0.9
CLIP1-215ENST00000541108 RTN1Q16799 776 aa20.69■□□□□ 0.9
CLIP1-215ENST00000541108 DPY19L2Q6NUT2 758 aa20.69■□□□□ 0.9
CLIP1-215ENST00000541108 FAM184AQ8NB25 1140 aa20.69■□□□□ 0.9
CLIP1-215ENST00000541108 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.69■□□□□ 0.9
CLIP1-215ENST00000541108 RBM28Q9NW13 759 aaKnown RBP20.69■□□□□ 0.9
CLIP1-215ENST00000541108 PGAP2Q9UHJ9 254 aa20.69■□□□□ 0.9
CLIP1-215ENST00000541108 STX8Q9UNK0 236 aa20.69■□□□□ 0.9
CLIP1-215ENST00000541108 ZDHHC9Q9Y397 364 aa20.69■□□□□ 0.9
CLIP1-215ENST00000541108 IGKV6D-41A0A0C4DH26 115 aa20.68■□□□□ 0.9
CLIP1-215ENST00000541108 AKR1B1P15121 316 aa20.68■□□□□ 0.9
CLIP1-215ENST00000541108 CERKLQ49MI3 558 aaPredicted RBP20.68■□□□□ 0.9
CLIP1-215ENST00000541108 RAB11FIP4Q86YS3 637 aa20.68■□□□□ 0.9
CLIP1-215ENST00000541108 RGS22Q8NE09 1264 aa20.68■□□□□ 0.9
CLIP1-215ENST00000541108 NUP133Q8WUM0 1156 aa20.68■□□□□ 0.9
CLIP1-215ENST00000541108 TNPO1Q92973 898 aaKnown RBP20.68■□□□□ 0.9
CLIP1-215ENST00000541108 CEP95Q96GE4 821 aa20.68■□□□□ 0.9
CLIP1-215ENST00000541108 MTMR4Q9NYA4 1195 aa20.68■□□□□ 0.9
CLIP1-215ENST00000541108 DDNO94850 711 aaPredicted RBP20.67■□□□□ 0.9
CLIP1-215ENST00000541108 IFNAR1P17181 557 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 MAP3K10Q02779 954 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 CLEC17AQ6ZS10 378 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 PNMA1Q8ND90 353 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 TOP1P11387 765 aaKnown RBP20.67■□□□□ 0.9
CLIP1-215ENST00000541108 LMOD1P29536 600 aaPredicted RBP20.67■□□□□ 0.9
CLIP1-215ENST00000541108 RASA3Q14644 834 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 CCDC144CPQ8IYA2 1237 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 DDX11Q96FC9 970 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 TMEM47Q9BQJ4 181 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 TMEM39BQ9GZU3 492 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 HACL1Q9UJ83 578 aa20.67■□□□□ 0.9
CLIP1-215ENST00000541108 FDPSP14324 419 aaKnown RBP20.66■□□□□ 0.9
CLIP1-215ENST00000541108 CTCFLQ8NI51 663 aaPredicted RBP20.66■□□□□ 0.9
CLIP1-215ENST00000541108 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.66■□□□□ 0.9
CLIP1-215ENST00000541108 GREB1LQ9C091 1923 aaPredicted RBP20.66■□□□□ 0.9
CLIP1-215ENST00000541108 TTLL1O95922 423 aa20.65■□□□□ 0.9
CLIP1-215ENST00000541108 KIF5BP33176 963 aa20.65■□□□□ 0.9
CLIP1-215ENST00000541108 EPS15P42566 896 aa20.65■□□□□ 0.9
CLIP1-215ENST00000541108 TMEM179Q6ZVK1 233 aa20.65■□□□□ 0.9
CLIP1-215ENST00000541108 APOBEC3FQ8IUX4 373 aaKnown RBP20.65■□□□□ 0.9
CLIP1-215ENST00000541108 KANSL2Q9H9L4 492 aa20.65■□□□□ 0.9
CLIP1-215ENST00000541108 ORC3Q9UBD5 711 aaPredicted RBP20.65■□□□□ 0.9
CLIP1-215ENST00000541108 STK36Q9NRP7 1315 aa20.65■□□□□ 0.9
CLIP1-215ENST00000541108 ZSCAN22P10073 491 aaPredicted RBP20.64■□□□□ 0.9
CLIP1-215ENST00000541108 L3MBTL3Q96JM7 780 aaPredicted RBP20.64■□□□□ 0.9
CLIP1-215ENST00000541108 ADARB2Q9NS39 739 aaKnown RBP20.64■□□□□ 0.9
CLIP1-215ENST00000541108 MTMR6Q9Y217 621 aa20.64■□□□□ 0.9
CLIP1-215ENST00000541108 FAM196BA6NMK8 535 aa20.64■□□□□ 0.89
CLIP1-215ENST00000541108 MPHOSPH10O00566 681 aaKnown RBP20.64■□□□□ 0.89
CLIP1-215ENST00000541108 DTNBO60941 627 aa20.64■□□□□ 0.89
CLIP1-215ENST00000541108 TRIM22Q8IYM9 498 aa20.64■□□□□ 0.89
CLIP1-215ENST00000541108 TEPSINQ96N21 525 aa20.64■□□□□ 0.89
CLIP1-215ENST00000541108 GBP4Q96PP9 640 aa20.64■□□□□ 0.89
CLIP1-215ENST00000541108 FMNL1O95466 1100 aaPredicted RBP20.63■□□□□ 0.89
CLIP1-215ENST00000541108 SLURP2P0DP57 97 aa20.63■□□□□ 0.89
CLIP1-215ENST00000541108 GNAQP50148 359 aa20.63■□□□□ 0.89
CLIP1-215ENST00000541108 SSRP1Q08945 709 aaKnown RBP20.63■□□□□ 0.89
CLIP1-215ENST00000541108 ABCB5Q2M3G0 1257 aa20.63■□□□□ 0.89
CLIP1-215ENST00000541108 TRPM4Q8TD43 1214 aa20.63■□□□□ 0.89
CLIP1-215ENST00000541108 DEFB129Q9H1M3 183 aa20.63■□□□□ 0.89
CLIP1-215ENST00000541108 CABP5Q9NP86 173 aa20.63■□□□□ 0.89
CLIP1-215ENST00000541108 ANGEL2Q5VTE6 544 aaKnown RBP20.62■□□□□ 0.89
CLIP1-215ENST00000541108 NBPF11Q86T75 865 aa20.62■□□□□ 0.89
CLIP1-215ENST00000541108 WASF1Q92558 559 aa20.62■□□□□ 0.89
CLIP1-215ENST00000541108 MKL1Q969V6 931 aa20.62■□□□□ 0.89
CLIP1-215ENST00000541108 RNF26Q9BY78 433 aaPredicted RBP20.62■□□□□ 0.89
CLIP1-215ENST00000541108 NYAP2Q9P242 653 aa20.62■□□□□ 0.89
CLIP1-215ENST00000541108 ATP6V1DQ9Y5K8 247 aa20.62■□□□□ 0.89
CLIP1-215ENST00000541108 PPP2R3BQ9Y5P8 575 aa20.62■□□□□ 0.89
CLIP1-215ENST00000541108 PITPNM2Q9BZ72 1349 aa20.62■□□□□ 0.89
CLIP1-215ENST00000541108 HIRAP54198 1017 aaPredicted RBP20.61■□□□□ 0.89
CLIP1-215ENST00000541108 GRM4Q14833 912 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 NFKBIBQ15653 356 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 PHKBQ93100 1093 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 HOOK2Q96ED9 719 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 ASTN2O75129 1339 aaPredicted RBP20.61■□□□□ 0.89
CLIP1-215ENST00000541108 VPS37CA5D8V6 355 aaPredicted RBP20.61■□□□□ 0.89
CLIP1-215ENST00000541108 GLTPD2A6NH11 291 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 H3BQV1 296 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 F13A1P00488 732 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 FUT2Q10981 343 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 IFFO2Q5TF58 517 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 TMTC3Q6ZXV5 915 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 LZTS2Q9BRK4 669 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 CLIP2Q9UDT6 1046 aa20.61■□□□□ 0.89
CLIP1-215ENST00000541108 DEXIO95424 95 aa20.6■□□□□ 0.89
CLIP1-215ENST00000541108 CDAN1Q8IWY9 1227 aa20.6■□□□□ 0.89
CLIP1-215ENST00000541108 SLC26A6Q9BXS9 759 aa20.6■□□□□ 0.89
CLIP1-215ENST00000541108 SYNPO2Q9UMS6 1093 aa20.6■□□□□ 0.89
CLIP1-215ENST00000541108 PALM3A6NDB9 673 aaPredicted RBP20.59■□□□□ 0.89
CLIP1-215ENST00000541108 PRPF3O43395 683 aaKnown RBP20.59■□□□□ 0.89
CLIP1-215ENST00000541108 SMARCA1P28370 1054 aa20.59■□□□□ 0.89
CLIP1-215ENST00000541108 FBXO18Q8NFZ0 1043 aa20.59■□□□□ 0.89
CLIP1-215ENST00000541108 RBM27Q9P2N5 1060 aaKnown RBP20.59■□□□□ 0.89
CLIP1-215ENST00000541108 MAD2L2Q9UI95 211 aa20.59■□□□□ 0.89
CLIP1-215ENST00000541108 PPFIA3O75145 1194 aa20.58■□□□□ 0.89
CLIP1-215ENST00000541108 SNHG28P0DPA3 235 aa20.58■□□□□ 0.89
CLIP1-215ENST00000541108 GUCY1A2P33402 732 aa20.58■□□□□ 0.89
CLIP1-215ENST00000541108 AKAP17AQ02040 695 aaKnown RBP20.58■□□□□ 0.89
CLIP1-215ENST00000541108 MIGA2Q7L4E1 593 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms